 |
Job Description | P77616 | Confidence | 45.47% | Date | Thu Jan 5 12:31:08 GMT 2012 |
Rank | 40 | Aligned Residues | 64 |
% Identity | 17% | Template | c3qgaD_ |
PDB info |
PDB header:hydrolase | Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; |
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
|
Resolution | 3.00 Å |
|
 |
  |   |
34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | I | M | N | E | S | D | K | G | E | A | L | K | L | T | N | Q | S | K | N | L | P | Y | L | A | Q | T | W | I | E | D | T | K | G | N | K | S | R | D | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | V | T | V | P | P | M | V | R | L | N | P | S | E | Q | I | Q | I | R | M | I | T | Q | E | K |
Query Conservation |   |
|
|   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |
|   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |
|   |
|
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|   |   |   |   |
|   |
|   |
|   |
|
|
| . |
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |
|
|   |
|
|
|   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |
|   |
|
|   |   |
|
|
Template Sequence |   |
I | E | L | N | A | G | K | E | I | T | E | L | K | V | T | N | K | G | P | K | . |
S | L | H | V | G | S | H | F | H | F | F | E | A | N | R | A | L | E | F | D | R | E | K | A | Y | G | K | R | L | D | I | P | S | G | N | T | L | R | I | G | A | G | E | T | K | T | V | H | L | I | P | I | G | G |
Template Known Secondary structure |   |
|
| T | T | T | T |
|
|
|  |  |  |  |  |  |  |
| S | S | S | . |
|  |  |  |  | T | T | S |
| G | G | G | S |
| T | T |  |  | S |
| G | G | G | G | T | T |  |  |  |
| S |
| T | T |
|  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |
| S | T |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
. | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|