Phyre 2 alignment of P77616 with c1yycA

Job Description P77616
Confidence 37.46% Date Thu Jan 5 12:31:08 GMT 2012

Rank 43 Aligned Residues 71

% Identity 7% Template c1yycA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1

Resolution UNK

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.													.	.																		.
Query SS confidence																.	.	.	.													.	.																		.
Query Sequence	S	I	R	F	N	N	K	M	P	Y	H	V	T	L	G	.	.	.	.	Y	I	G	T	N	G	V	T	M	L	P	Q	.	.	T	Q	S	L	M	V	T	P	F	S	Y	A	N	T	Q	F	K	.	N	V	P	S	T	F	Q	V	G	Y	I	N	D	F	G	G	L	S	F	Y	E	I	N	C	P	V	V
Query Conservation																.	.	.	.													.	.																		.
Alig confidence																.	.	.	.													.	.																		.
Template Conservation
Template Sequence	K	V	S	V	K	N	P	Y	S	Q	S	I	P	I	C	Q	I	S	Y	I	L	K	S	A	T	R	T	I	A	S	G	T	I	P	D	P	G	S	L	V	G	S	G	T	T	V	L	D	V	P	V	K	V	A	Y	S	I	A	V	S	L	M	K	D	M	C	T	D	W	D	I	D	Y	Q	L	D	I	G
Template Known Secondary structure								S	S	S			B			S								S	S	S								S				B			S	S												S							T						S	S
Template Predicted Secondary structure
Template SS confidence
	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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