 |
Job Description | P76066 | Confidence | 26.00% | Date | Thu Jan 5 12:18:06 GMT 2012 |
Rank | 189 | Aligned Residues | 58 |
% Identity | 16% | Template | c3k69A_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:putative transcription regulator; |
PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution
|
Resolution | 1.95 Å |
|
  |   |
101 | . | . | . | . | . | . | . | . | |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | |
. | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  | . |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | T | A | T | I | E | Q | R | G | . |
P | Q | T | A | D | E | L | A | T | L | F | G | T | T | S | R | K | V | A | S | T | L | A | M | A | I | S | K | G | R | L | I | . |
R | V | N | Q | G | G | K | F | R | Y | C | I | P | G | D | N | L |
Query Conservation |   |
|   |
|
|
|
|
|
|
| . |
|
|
|
|   |
|
|
|
|
|
|
|
|   |   |   |   |
|   |
|   |
|   |   |
|
|   |   |
|
|
|
| . |
|   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |
|
|
|   |   |
|   |
|
|
|
|
|   |
|   |   |
|   |   |
|
|
|   |
|
|
|   |
|   |   |
|
Template Sequence |   |
I | L | Y | L | D | A | H | R | D | S | K | V | A | S | R | E | L | A | Q | S | L | H | L | N | P | V | X | I | R | N | I | L | S | V | L | H | K | H | G | Y | L | T | G | T | V | G | K | N | G | G | Y | Q | L | D | L | A | L | A | D | X |
Template Known Secondary structure |   |
 |  |  |  |  | T | T | T | T | S |
| B |
|  |  |  |  |  |  |  |  | T | S |
| G | G | G | T |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |
| S | T | T |
|  |  |  |
|
| S |
| G | G | G | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|