 |
Job Description | P32171 | Confidence | 97.33% | Date | Thu Jan 5 11:49:51 GMT 2012 |
Rank | 62 | Aligned Residues | 75 |
% Identity | 21% | Template | c3cqyA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; |
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
|
Resolution | 2.30 Å |
|
 |
  |   |
361 | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | |
. | . | 420 | . | . | . | . | . | |
|
|
. | . | . | . | 430 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |
|
|  |  |  |  |
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | E | S | D | A | E | L | A | R | C | I | F | D | S | L | A | L | L | Y | A | D | V | L | H | E | L | A | Q | L | R | G | E | D | F | S | Q | L | H | I | V | G | G | G | C | Q | N | T | L | L | N | Q | L | C | A | D | A | C | . |
G | I | R | V | I | A | G | P | . |
. |
. |
V | E | A | S | T | L | G | N | I | G | I |
Query Conservation |   |
  |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|   |
|   |
|   |   |
|   |
|
|   |
|
|
|   | . |
|   |
|
|   |   |   |   | . | . | . |   |
|   |   |
|   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|   |   |
|
|
|
|   |   |
|
|   |
|
|   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |
|   |
|   |
|
|
|
|   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |
|
|
Template Sequence |   |
Q | L | N | E | E | D | I | Q | S | T | L | L | D | L | T | C | H | S | I | A | Q | D | I | L | K | L | . |
. |
. |
. |
. |
A | Q | E | G | E | L | F | V | C | G | G | G | A | F | N | A | E | L | X | Q | R | L | A | A | L | L | P | G | Y | R | I | D | T | T | S | A | L | G | V | D | P | K | W | A | E | G | I | A | F |
Template Known Secondary structure |   |
T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
| S | S |  |  |  |  |  |  | S | G | G | G | G |
|  |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  | G | G | G | G | T |
|
| T | T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
261 | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . |
  |
  |   |
437 | . | . | 440 |
Predicted Secondary structure |   |
 |  |  |  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
Q | L | M | T |
Query Conservation |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|   |
|
|
Template Sequence |   |
A | W | L | A |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
336 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|