Job Description P0A6E9 Confidence 99.26% Date Thu Jan 5 11:02:58 GMT 2012 Rank 42 Aligned Residues 170 % Identity 14% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	I	T	G	T	D	T	S	V	G	K	T	V	V	S	R	A	L	L	Q	A	L	A	S	Q	G	K	T	V	A	G	Y	K	P	V	A	K	G	S	K	E	T	P	E	G	L	R	N	K	D	A	L	V	L	Q	S	V	S	T	I	E	L	P	Y	E	A	V	N	P	I	A	L	S	E	E	E	S	S	V
Query Conservation
Alig confidence							.																																										.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation							.																																										.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		I	L	L	V	G	.	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	.	.	.	.	.	.	.	.	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	.	.	.	.
Template Known Secondary structure							.		S	S	S	S	T	T																							S				T	T	G	G	G	S	S		.	.	.	.	.	.	.	.						S	S							S	S	S			S	S	S	.	.	.	.
Template Predicted Secondary structure							.																																										.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		103	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	S	C	P	I	N	Y	T	L	I	S	N	G	L	A	N	L	T	E	K	V	D	H	V	V	V	E	G	T	G	G	W	R	S	L	M	N	D	L	R	P	L	S	E	W	V	V	Q	E	Q	L	P	V	L	M	V	V	G	I	Q	E	G	C	I	N	H	A	L	L	T	A	Q	A	I	A	N	D	G	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.												.																																													.
Template Conservation		.	.	.	.	.	.	.	.												.																																													.
Template Sequence		.	.	.	.	.	.	.	.	D	I	V	K	E	G	M	E	K	F	K	.	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	.	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T							T	T	S	.	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	.	G	G										T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.												.																																													.
Template SS confidence
										170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	I	G	W	V	A	N	R	I	N	P	G	L	A	H	Y	A	E	I	I	D	V	L	G	K	K	L	P	A	P	L	I	G	E
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		E	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	.	.	S	A	V	A	E	T	K	A	P	I	K	F	I
Template Known Secondary structure		S									S	S	S		S	T	T					.	.						S	S
Template Predicted Secondary structure																						.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions