Job Description P0A6E9 Confidence 97.70% Date Thu Jan 5 11:02:58 GMT 2012 Rank 69 Aligned Residues 168 % Identity 10% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	F	F	I	T	G	T	D	T	S	V	G	K	T	V	V	S	R	A	L	L	Q	A	L	A	S	Q	G	K	T	V	A	G	Y	K	P	V	A	K	G	S	K	E	T	P	E	G	L	R	N	K	D	A	L	V	L	Q	S	V	S	T	I	E	L	P	Y	E	A	V	N	P	I	A	L	S	E	E	E	S
Query Conservation
Alig confidence												.	.	.	.	.																										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.																										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	V	I	M	L	V	G	V	Q	G	.	.	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	.	.	.	.	.	.	.	.	.	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	.	.	.	.	.	.	.	.	.	.	.	Q	I	G	V	P	V	Y
Template Known Secondary structure									S			.	.	.	.	.													T	T											S	.	.	.	.	.	.	.	.	.	S													.	.	.	.	.	.	.	.	.	.	.			T
Template Predicted Secondary structure												.	.	.	.	.																										.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.										.	.	.	.	.	.	140	.	.	.	.	.	.												.	.	.	150	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		S	V	A	H	S	C	P	I	N	Y	T	L	I	S	N	G	L	A	N	L	T	E	K	V	D	H	V	V	V	E	G	T	G	G	W	R	S	L	M	N	D	.	.	L	R	P	L	S	E	W	V	V	Q	E	Q	L	P	V	L	M	V	V	G	I	Q	E	G	C	I	N	H	A	L	L	T	A	Q	A	I	A
Query Conservation																																											.	.
Alig confidence																																											.	.
Template Conservation
Template Sequence		G	E	P	G	E	K	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	K	F	N	Q
Template Known Secondary structure				T	T																		T	T		S									S			T	T																			S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	G	L	P	L	I	G	W	V	A	N	R	I	N	P	G	L	A	H	Y	A	E	I	I	D	V	L	G	K	K	L	P	A	P	L	I	G	E
Query Conservation
Alig confidence						.	.																			.	.
Template Conservation						.	.																			.	.
Template Sequence		A	S	K	I	.	.	G	T	I	I	I	T	K	M	D	G	T	A	K	G	G	G	A	L	.	.	S	A	V	A	A	T	G	A	T	I	K	F	I
Template Known Secondary structure				T	T	.	.								T	T	S		S							.	.					T	T	T
Template Predicted Secondary structure						.	.																			.	.
Template SS confidence
		238	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions