Job Description P37355 Confidence 100.00% Date Thu Jan 5 11:55:32 GMT 2012 Rank 5 Aligned Residues 245 % Identity 17% Template c2y6vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) Resolution 2.83 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																	.				.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																																	.				.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		A	K	H	G	K	P	G	L	P	W	L	V	F	L	H	G	F	S	G	D	C	H	E	W	Q	E	V	G	E	A	F	.	A	D	Y	.	.	.	.	.	.	.	.	S	R	L	Y	V	D	L	P	G	H	G	G	S	A	A	I	S	V	D	.	.	.	.	.	.	G	F	D	D	V	T	D	L	L	R	K	T
Query Conservation																																	.				.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence																																	.				.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	S	R	T	A	T	R	L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	E	Y	Y	L	P	R	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	H	G	D	S	A	V	R	N	R	G	R	L	G	T	N	F	N	W	I	D	G	A	R	D	V	L	K	I
Template Known Secondary structure					T	T												T	T			G	G	G	G	G	G	G	G	G	G	S					T	T	T													T	T	S							T	T	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		72	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.
Predicted Secondary structure												.	.	.	.	.																																																									.	.	.	.
Query SS confidence												.	.	.	.	.																																																									.	.	.	.
Query Sequence		L	V	S	Y	N	I	L	D	F	W	.	.	.	.	.	L	V	G	Y	S	L	G	G	R	V	A	M	M	A	A	C	Q	G	L	A	G	L	C	G	V	I	V	E	G	G	H	P	G	L	Q	N	A	E	Q	R	A	E	R	Q	R	S	D	R	Q	W	V	Q	R	F	L	T	.	.	.	.	E	P	L	T	A
Query Conservation												.	.	.	.	.																																																									.	.	.	.
Alig confidence												.	.	.	.	.																																																									.	.	.	.
Template Conservation
Template Sequence		A	T	E	L	G	S	I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	Q	P	N	L	F	H	L	L	I	L	I	E	P	V	V	I	T	R	K	A	I	P	P	D	S	P	Q	I	P	E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E
Template Known Secondary structure								G	G	G		S									T														T	T	S		S						S				S							T	T															T					S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.							.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		V	F	A	D	W	Y	Q	Q	P	V	F	A	S	L	N	D	D	Q	R	R	E	L	V	A	L	R	S	N	N	N	.	.	.	.	.	.	G	A	T	L	A	A	M	L	E	A	T	S	L	A	V	Q	P	D	L	R	A	N	L	S	A	R	T	F	A	F	Y	Y	L	C	G	E	R	D	S	K	F	R	A	L
Query Conservation																																.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	K	Y	M	R	N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	L	L	C	Y	M	N	M	Q	T	F	A	P	F	L	I	S	N	V	K	F	V	R	K	R	T	I	H	I	V	G	A	R	S	N	W	P	P	Q	N
Template Known Secondary structure									T	S	S		T	T	S																					S	S								T	T	S		G	G	G	T						T	T	G	G	G			S								T	T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		217	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		A	A	E	.	.	.	.	.	L	A	A	D	C	H	V	I	P	R	A	G	H	N	A	H	R	E	N	P	A	G	V	I	A	S	L	A	Q	I	L	R
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.
Template Conservation
Template Sequence		Q	L	F	L	Q	K	T	L	Q	N	Y	H	L	D	V	I	P	G	G	S	H	L	V	N	V	E	A	P	D	L	V	I	E	R	I	N	H	H	I	H
Template Known Secondary structure										S	S							T	T			T	T					S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions