Job Description P36646 Confidence 4.50% Date Thu Jan 5 11:53:26 GMT 2012 Rank 88 Aligned Residues 76 % Identity 16% Template c2vz4A_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator tipa; PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna Resolution 2.90 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	L	M	A	L	Q	Q	Q	M	V	T	P	L	S	L	K	R	I	A	I	N	S	A	Q	W	R	G	D	K	S	A	E	V	I	H	Q	L	A	T	L	L	K	A	G	L	T	L	S	E	G	L	A	L	L	A	E	Q	H	P	S	K	Q	W	Q	A	L	L	Q	S	L	A	H	D	L	E	Q
Query Conservation
Alig confidence																.																					.
Template Conservation																.																					.
Template Sequence		V	R	T	L	H	H	Y	D	D	I	G	L	L	V	.	P	S	E	R	S	H	A	G	H	R	R	Y	S	D	A	D	L	D	R	L	.	Q	Q	I	L	F	Y	R	E	L	G	F	P	L	D	E	V	A	A	L	L	D	D	R	A	H	L	R	R	Q	H	E	L	L	S	A	R	I	G	K	L	Q	K
Template Known Secondary structure												T	S	S		.		S				S	S					B									.									T	T											T
Template Predicted Secondary structure																.																					.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions