Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	S	K	Q	L	W	R	W	H	G	I	T	G	D	G	N	A	Q	D	G	M	L	W	A	E	S	R	T	L	L	L	M	A	L	Q	Q	Q	M	V	T	P	L	S	L	K	R	I	A	I	N	S	A	Q	W	R	G	D	K	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?									?			?																					?									?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	E	V	I	H	Q	L	A	T	L	L	K	A	G	L	T	L	S	E	G	L	A	L	L	A	E	Q	H	P	S	K	Q	W	Q	A	L	L	Q	S	L	A	H	D	L	E	Q	G	I	A	F	S	N	A	L	L	P	W	S	E	V
Secondary structure
SS confidence
Disorder														?													?																				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	P	P	L	Y	Q	A	M	I	R	T	G	E	L	T	G	K	L	D	E	C	C	F	E	L	A	R	Q	Q	K	A	Q	R	Q	L	T	D	K	V	K	S	A	L	R	Y	P	I	I	I	L	A	M	A	I	M	V	V	V	A	M
Secondary structure
SS confidence
Disorder																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	H	F	V	L	P	E	F	A	A	I	Y	K	T	F	N	T	P	L	P	A	L	T	Q	G	I	M	T	L	A	D	F	S	G	E	W	S	W	L	L	V	L	F	G	F	L	L	A	I	A	N	K	L	L	M	R	R	P	T	W
Secondary structure
SS confidence
Disorder																?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	I	V	R	Q	K	L	L	L	R	I	P	I	M	G	S	L	M	R	G	Q	K	L	T	Q	I	F	T	I	L	A	L	T	Q	S	A	G	I	T	F	L	Q	G	V	E	S	V	R	E	T	M	R	C	P	Y	W	V	Q	L	L
Secondary structure
SS confidence
Disorder																																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	Q	I	Q	H	D	I	S	N	G	Q	P	I	W	L	A	L	K	N	T	G	E	F	S	P	L	C	L	Q	L	V	R	T	G	E	A	S	G	S	L	D	L	M	L	D	N	L	A	H	H	H	R	E	N	T	M	A	L	A	D
Secondary structure
SS confidence
Disorder										?	?	?	?																								?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Sequence		N	L	A	A	L	L	E	P	A	L	L	I	I	T	G	G	I	I	G	T	L	V	V	A	M	Y	L	P	I	F	H	L	G	D	A	M	S	G	M	G
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3c1q chain A Region: 51 - 162 Aligned: 112 Modelled: 112 Confidence: 99.9% Identity: 26% PDB header:transport protein Chain: A: PDB Molecule:general secretion pathway protein f; PDBTitle: the three-dimensional structure of the cytoplasmic domains of epsf2 from the type 2 secretion system of vibrio cholerae Phyre2 PDB 2whn chain A Region: 249 - 358 Aligned: 110 Modelled: 110 Confidence: 99.8% Identity: 31% PDB header:protein transport Chain: A: PDB Molecule:pilus assembly protein pilc; PDBTitle: n-terminal domain from the pilc type iv pilus biogenesis2 protein Phyre2 PDB 3i3a chain C Region: 41 - 102 Aligned: 62 Modelled: 62 Confidence: 54.4% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa Phyre2 PDB 2bbj chain B Region: 58 - 238 Aligned: 134 Modelled: 150 Confidence: 48.5% Identity: 18% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 3cum chain A domain 1 Region: 253 - 354 Aligned: 102 Modelled: 102 Confidence: 47.6% Identity: 13% Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like Family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain Phyre2 PDB 3c8m chain A Region: 73 - 116 Aligned: 44 Modelled: 44 Confidence: 45.1% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium Phyre2 PDB 2ejw chain B Region: 73 - 116 Aligned: 44 Modelled: 44 Confidence: 41.4% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:homoserine dehydrogenase; PDBTitle: homoserine dehydrogenase from thermus thermophilus hb8 Phyre2 PDB 2jf2 chain A domain 1 Region: 41 - 102 Aligned: 62 Modelled: 62 Confidence: 35.6% Identity: 16% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 2d1l chain A Region: 79 - 163 Aligned: 84 Modelled: 85 Confidence: 35.1% Identity: 11% PDB header:protein binding Chain: A: PDB Molecule:metastasis suppressor protein 1; PDBTitle: structure of f-actin binding domain imd of mim (missing in metastasis) Phyre2 PDB 1y2o chain A domain 1 Region: 77 - 163 Aligned: 85 Modelled: 83 Confidence: 31.7% Identity: 7% Fold: BAR/IMD domain-like Superfamily: BAR/IMD domain-like Family: IMD domain Phyre2 PDB 3ok8 chain A Region: 90 - 163 Aligned: 73 Modelled: 74 Confidence: 29.4% Identity: 12% PDB header:protein binding Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein PDBTitle: i-bar of pinkbar Phyre2 PDB 2c5q chain E Region: 98 - 120 Aligned: 23 Modelled: 23 Confidence: 28.0% Identity: 22% PDB header:structural genomics,unknown function Chain: E: PDB Molecule:rraa-like protein yer010c; PDBTitle: crystal structure of yeast yer010cp Phyre2 PDB 2ezl chain A Region: 58 - 89 Aligned: 32 Modelled: 32 Confidence: 23.5% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 3iug chain A Region: 107 - 159 Aligned: 52 Modelled: 53 Confidence: 19.0% Identity: 17% PDB header:splicing Chain: A: PDB Molecule:rho/cdc42/rac gtpase-activating protein rics; PDBTitle: crystal structure of the rhogap domain of rics Phyre2 PDB 3ipd chain B Region: 94 - 186 Aligned: 93 Modelled: 93 Confidence: 18.0% Identity: 12% PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 Phyre2 PDB 1j2z chain A Region: 41 - 102 Aligned: 61 Modelled: 62 Confidence: 17.7% Identity: 11% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 3r0s chain A Region: 41 - 102 Aligned: 60 Modelled: 62 Confidence: 17.6% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni Phyre2 PDB 2jml chain A Region: 29 - 90 Aligned: 62 Modelled: 62 Confidence: 15.9% Identity: 19% PDB header:transcription Chain: A: PDB Molecule:dna binding domain/transcriptional regulator; PDBTitle: solution structure of the n-terminal domain of cara repressor Phyre2 PDB 3ing chain A Region: 29 - 116 Aligned: 78 Modelled: 88 Confidence: 15.3% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase (np_394635.1) from2 thermoplasma acidophilum at 1.95 a resolution Phyre2 PDB 3r1f chain O Region: 110 - 149 Aligned: 40 Modelled: 40 Confidence: 13.5% Identity: 20% PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis Phyre2 1 c3c1qA_ 2 c2whnA_ 3 c3i3aC_ 4 c2bbjB_ 5 d3cuma1 6 c3c8mA_ 7 c2ejwB_ 8 d2jf2a1 9 c2d1lA_ 10 d1y2oa1 11 c3ok8A_ 12 c2c5qE_ 13 d2ezla_ 14 c3iugA_ 15 c3ipdB_ 16 d1j2za_ 17 c3r0sA_ 18 c2jmlA_ 19 c3ingA_ 20 c3r1fO_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3c1qA_ 99.9 26 PDB header:transport protein Chain: A: PDB Molecule:general secretion pathway protein f; PDBTitle: the three-dimensional structure of the cytoplasmic domains of epsf2 from the type 2 secretion system of vibrio cholerae 2 c2whnA_ 99.8 31 PDB header:protein transport Chain: A: PDB Molecule:pilus assembly protein pilc; PDBTitle: n-terminal domain from the pilc type iv pilus biogenesis2 protein 3 c3i3aC_ 54.4 13 PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa 4 c2bbjB_ 48.5 18 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 5 d3cuma1 47.6 13 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 6 c3c8mA_ 45.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium 7 c2ejwB_ 41.4 20 PDB header:oxidoreductase Chain: B: PDB Molecule:homoserine dehydrogenase; PDBTitle: homoserine dehydrogenase from thermus thermophilus hb8 8 d2jf2a1 35.6 16 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 9 c2d1lA_ 35.1 11 PDB header:protein binding Chain: A: PDB Molecule:metastasis suppressor protein 1; PDBTitle: structure of f-actin binding domain imd of mim (missing in metastasis) 10 d1y2oa1 31.7 7 Fold:BAR/IMD domain-like Superfamily:BAR/IMD domain-like Family:IMD domain 11 c3ok8A_ 29.4 12 PDB header:protein binding Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein PDBTitle: i-bar of pinkbar 12 c2c5qE_ 28.0 22 PDB header:structural genomics,unknown function Chain: E: PDB Molecule:rraa-like protein yer010c; PDBTitle: crystal structure of yeast yer010cp 13 d2ezla_ 23.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 14 c3iugA_ 19.0 17 PDB header:splicing Chain: A: PDB Molecule:rho/cdc42/rac gtpase-activating protein rics; PDBTitle: crystal structure of the rhogap domain of rics 15 c3ipdB_ 18.0 12 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 16 d1j2za_ 17.7 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 17 c3r0sA_ 17.6 18 PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni 18 c2jmlA_ 15.9 19 PDB header:transcription Chain: A: PDB Molecule:dna binding domain/transcriptional regulator; PDBTitle: solution structure of the n-terminal domain of cara repressor 19 c3ingA_ 15.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase (np_394635.1) from2 thermoplasma acidophilum at 1.95 a resolution 20 c3r1fO_ 13.5 20 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 21 c3k4iC_ not modelled 13.1 10 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000 22 c2pmzN_ not modelled 13.1 10 PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 23 c3byiA_ not modelled 12.7 13 PDB header:signaling protein Chain: A: PDB Molecule:rho gtpase activating protein 15; PDBTitle: crystal structure of human rho gtpase activating protein 15 (arhgap15) 24 c3do5A_ not modelled 12.3 5 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution 25 c3kuqA_ not modelled 12.2 11 PDB header:hydrolase activator Chain: A: PDB Molecule:rho gtpase-activating protein 7; PDBTitle: crystal structure of the dlc1 rhogap domain 26 c3neuA_ not modelled 11.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1836 protein; PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262 27 d1xa6a1 not modelled 10.6 11 Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain) 28 c3gndC_ not modelled 10.1 9 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 29 d1i4ja_ not modelled 9.0 15 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 30 d1e8ob_ not modelled 8.4 14 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 31 d1jnsa_ not modelled 7.7 19 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 32 c1xa6A_ not modelled 7.7 11 PDB header:signaling protein Chain: A: PDB Molecule:beta2-chimaerin; PDBTitle: crystal structure of the human beta2-chimaerin 33 d1wn0a1 not modelled 7.3 19 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Phosphorelay protein-like 34 c3kc2A_ not modelled 7.2 19 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae 35 d2gyqa1 not modelled 7.1 18 Fold:Ferritin-like Superfamily:Ferritin-like Family:YciF-like 36 c1zk6A_ not modelled 7.1 15 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: nmr solution structure of b. subtilis prsa ppiase 37 d1vq3a_ not modelled 7.0 13 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 38 c2zhhA_ not modelled 6.9 15 PDB header:transcription Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr; PDBTitle: crystal structure of soxr 39 c3gpkA_ not modelled 6.5 28 PDB header:isomerase Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution. 40 d2gs4a1 not modelled 6.5 20 Fold:Ferritin-like Superfamily:Ferritin-like Family:YciF-like 41 c2ftcM_ not modelled 6.5 19 PDB header:ribosome Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 42 c3ibqA_ not modelled 6.5 11 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 43 c1sneB_ not modelled 6.5 46 PDB header:de novo protein Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 44 c1sneA_ not modelled 6.5 46 PDB header:de novo protein Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 45 c2hx1D_ not modelled 6.5 8 PDB header:hydrolase Chain: D: PDB Molecule:predicted sugar phosphatases of the had PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution 46 d1914a2 not modelled 6.4 14 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 47 c1ebuA_ not modelled 6.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: homoserine dehydrogenase complex with nad analogue and l-2 homoserine 48 d1gtda_ not modelled 6.0 4 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 49 c2eelA_ not modelled 5.9 17 PDB header:apoptosis Chain: A: PDB Molecule:cell death activator cide-a; PDBTitle: solution structure of the cide-n domain of human cell death2 activator cide-a 50 c2i7aA_ not modelled 5.9 12 PDB header:hydrolase Chain: A: PDB Molecule:calpain 13; PDBTitle: domain iv of human calpain 13 51 c2qjhH_ not modelled 5.9 10 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 52 c2zw2B_ not modelled 5.9 8 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 53 c2rqsA_ not modelled 5.8 20 PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin) 54 d1hara_ not modelled 5.7 13 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 55 d1oqwa_ not modelled 5.5 11 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 56 d1d4ba_ not modelled 5.5 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 57 d1eqfa1 not modelled 5.5 6 Fold:Bromodomain-like Superfamily:Bromodomain Family:Bromodomain 58 c2kncA_ not modelled 5.5 17 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 59 d1c9fa_ not modelled 5.4 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 60 c1zzwA_ not modelled 5.4 15 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5 61 d2pila_ not modelled 5.4 21 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 62 c3q6aH_ not modelled 5.4 19 PDB header:structure genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of the protein ssp2350 from staphylococcus2 saprophyticus, northeast structural genomics consortium target syr116 63 d1ibxa_ not modelled 5.3 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 64 d2pv2a1 not modelled 5.3 10 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 65 c2kgjA_ not modelled 5.2 16 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase d; PDBTitle: solution structure of parvulin domain of ppid from e.coli 66 d2cbia1 not modelled 5.1 16 Fold:Hyaluronidase domain-like Superfamily:Hyaluronidase post-catalytic domain-like Family:Hyaluronidase post-catalytic domain-like 67 c1zrtD_ not modelled 5.1 4 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 68 c3hefB_ not modelled 5.1 12 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 69 c3nmeA_ not modelled 5.0 17 PDB header:hydrolase Chain: A: PDB Molecule:sex4 glucan phosphatase; PDBTitle: structure of a plant phosphatase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0