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Job DescriptionP24228
Confidence98.08%DateThu Jan 5 11:41:22 GMT 2012
Rank56Aligned Residues252
% Identity19%Templated1pyya4
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase
Resolution2.42

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30... ......40.........50 .........60.........70..
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Query Sequence  NVDEYITQLPAG. . . . . . . ANLALMVQKVGASAPAI. . . . . . . . . . . . . . . . . . . . . . DYHSQQMALPASTQKVITALAA
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Template Sequence  PLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMMLAAA
Template Known Secondary structure 

STTTTS


TTT
TT

TT






B

GGGG
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   268.270.........280.........290.........300.........310.........320.........330.........340.......
 
   73......80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  LIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWP
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Template Conservation 

 
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Template Sequence  IDNN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TFPGGEVFNSSELKIADATIRDW
Template Known Secondary structure  TT.....................................................


TT



TT

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   348.350. ........360.........370....
 
   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  WNDMTQCFSAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLT
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Template Sequence  DVNEGLTGGRMMT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT

S
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   375....380.......
 
   233......240.........250.........260.........270.........280.........290.........300.........310..
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Query Sequence  GCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIAD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FSQGFAHSSNVGMT
Template Known Secondary structure  ..................................................................TT
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   388.390.........400.
 
   313......320.........330.........340.........350.........360.... .....370......
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Query Sequence  TVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLSRHNL. . . . . . . . . . . . . . . . IAPATMMQVLQY
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Template Sequence  LLEQKM. . . . . . . . . . . . . GDATWLDYLNR. FKFGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTA
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.TTTTS



S
SS



B


SSGGGT
S
BB
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   402..... ..410........ .420.........430.........440.........450.........460.......
 
   377..380..... ....390.........400....... ..410.......
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Query Sequence  IAQHDNELN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FISMLPLAGYDGSLQYRAGLHQ. . . . . AGVDGKVSAK
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Template Sequence  IANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALK
Template Known Secondary structure  TTT


B


GGGT





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TTT
TTTTTTSS

TTS

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   468.470.........480.........490.........500.........510.........520.........530.........540.......
 
   418.420... ......430.........440.........450.........460.........470...
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Query Sequence  TGSLQG. . . . . . . . . . . . . . . VYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDI
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Template Sequence  SGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQLGEFANPILERASAMKDSL
Template Known Secondary structure 
B
SSSSSB

STT
SSSS
SS
SS

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   548.550.........560.........570.........580.........590.........600.........610........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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