Job Description P24228 Confidence 97.02% Date Thu Jan 5 11:41:22 GMT 2012 Rank 63 Aligned Residues 155 % Identity 16% Template c3oc2A_ PDB info PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa Resolution 1.97 Å

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		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																																		.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	I	M	L	K	K	S	D	N	M	I	A	D	T	V	F	R	M	I	G	H	A	R	F	N	V	P	G	T	W	R	A	G	S	D	A	V	R	Q	I	L	R	Q	Q	A	G	V	.	.	D	I	G	N	T	I	I	A	D	G	S	G	L	S	R	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.												.				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		L	T	G	I	L	I	K	S	S	N	V	G	I	S	K	I	A	F	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	E	S	I	Y	S	V	M	Q	Q	.	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W	P	K	A	E	T	A	T	L	A	Y
Template Known Secondary structure								T	T													.	.	.	.	.	.	.	.	.	.	.	.	.												.	T	T	T	T	S					S		T	T					B					S	S											T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.														.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
						364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.																			.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		.	.	.	.	L	I	A	P	A	T	M	M	Q	V	L	Q	Y	I	A	Q	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	L	N	F	I	S	M	L	P	L	A	G	Y	D	G	S	L	Q	.	Y	R	A	G	L	H	Q	A	G	V	D	G	K	V	S	A	K	T	G	S
Query Conservation		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		G	Y	G	L	S	V	T	A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	V	Q	V	I	S	P	E	V	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	Q	G	G	V	F	R	A	Q	V	P	G	Y	H	A	A	G	K	S	G	T
Template Known Secondary structure		T		S		B	B														T	T	T						B	S	B			S	S								S																		S	T	T	S		G	G	G			T	T	S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		421	.	.	.	.	.	.			.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.		.	.	.	.	.	470	.	.	.
Predicted Secondary structure									.	.																																						.
Query SS confidence									.	.																																						.
Query Sequence		L	Q	G	V	Y	N	L	.	.	A	G	F	I	T	T	A	S	G	Q	R	M	A	F	V	Q	Y	L	S	G	Y	A	V	E	P	A	D	Q	R	N	R	R	I	P	L	V	R	.	F	E	S	R	L	Y	K	D	I
Query Conservation									.	.																																						.
Alig confidence									.	.																						.	.	.	.	.	.											.
Template Conservation																																.	.	.	.	.	.
Template Sequence		A	R	K	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I	A	M	V	V	V	I	D	E	P	F	.	.	.	.	.	.	G	G	L	V	S	A	P	V	F	S	K	V	M	A	G	A	L	R	L	M
Template Known Secondary structure																T	T	S														.	.	.	.	.	.					T															T
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.							.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions