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Job DescriptionP24228
Confidence99.75%DateThu Jan 5 11:41:22 GMT 2012
Rank42Aligned Residues263
% Identity23%Templatec3humB_
PDB info PDB header:hydrolase/antibioticsChain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 from2 staphylococcus aureus col in complex with cefotaxime
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50.........60.........70.........80.........90......
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Query Sequence  SVQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGV
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Template Sequence  PVQAANQYGYAGLSAAYEPTSAVNVS. QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNK. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
TT

GGG

S.TT
BSTT


GGGGT..................
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   31........40.........50...... ...60.........70.........80.........90.
 
   97..100.........110.........120.........130.........140.........150.........160.........170......
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Query Sequence  LKGDLVARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GQLSLDDT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ....................................TSS
TT
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   92.......
 
   177..180.........190.........200.........210.........220.........230.........240.........250......
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Query Sequence  SLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAG
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   257..260.........270.........280.. .......290.........300.........310.........320.........330.....
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Query Sequence  AILKDELKQAGITWSGTLLRQTQVNE. PGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDA
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Template Sequence  . . . . . . . . . . . VTMTNKEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVS. . . . . . . KNTSDFVDL
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TT
TT






TT
S

S.......SS
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   100.........110.........120.........130.........140.........150.. .......160.
 
   336...340.........350.........360 .........370.........380 .........390.........
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Query Sequence  VRQILRQQAGVDIGNTIIADGSGLS. . . . . . . . . . . . . . . RHNLIAPATMMQVLQYIAQH. DNELNFISMLPLAGYDGSL
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Template Sequence  MNNKAKA. IG. . MKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAVTY
Template Known Secondary structure  .T..
TT
B
SSSS
S
GGGS
GGGTT



B
TTT
SS
TT
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   162...... .170 .........180.........190.........200.........210.........220.........230........
 
   400........ .410.........420.... .....430.........440.........450.........460.........470.....
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Query Sequence  QYRAGLHQA. . . GVDGKVSAKTGSLQGV. YNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQ
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Template Sequence  YTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTK. RGKFRINQVIMGAGDYKNLGGEKQRNMM. . . . GNALMERSFD
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TTSTTSTT

TTTTT.TTSBTTTTB
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   239240.........250.........260.........270..... ....280.........290.........300... ......310...
 
   476
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Query Sequence  N
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Template Sequence  Q
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   314
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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