Job Description P24228 Confidence 97.37% Date Thu Jan 5 11:41:22 GMT 2012 Rank 62 Aligned Residues 155 % Identity 15% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																					.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	I	M	L	K	K	S	D	N	M	I	A	D	T	V	F	R	M	I	G	H	A	R	F	N	V	P	G	T	W	R	A	G	S	D	A	V	R	Q	I	L	R	Q	Q	A	G	V	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	T	I	I	A	D	G	S	G
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		V	R	G	I	X	Q	K	S	S	N	V	G	T	S	K	L	S	A	R	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	X	Y	D	F	Y	H	E	.	L	G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L	L	R	N	W	R	R	W	R	P	I	E	Q	A	T	X	S	F
Template Known Secondary structure									T										T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.											.	T	T	T	T	S					S		T	T									G	G	G											T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.														.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.																							.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	R	H	N	L	I	A	P	A	T	M	M	Q	V	L	Q	Y	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	D	N	E	L	N	F	I	S	M	L	P	L	A	G	Y	D	G	S	L	Q	Y	R	A	G	L	H	Q	A	G	V	D	G	K	V	S	A
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation					.																																																																						.	.	.	.
Template Sequence		G	Y	G	.	L	Q	L	S	L	L	Q	L	A	R	A	Y	T	A	L	T	H	D	G	V	L	L	P	L	S	F	E	K	Q	A	V	A	P	Q	G	K	R	I	F	K	E	T	A	R	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T	G	T	A	G	A	V	D	G	F	D	.	.	.	.	V	G	A
Template Known Secondary structure		T		S	.			B														T	T	T						B	S	B			S	S								S													T	T	T	S	T	T	S	S		G	G	G			T	T	S		.	.	.	.
Template Predicted Secondary structure					.																																																																						.	.	.	.
Template SS confidence
		421	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.					.	.	.
		417	.	.	420	.	.				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.		.	.	.	.	.	470	.	.	.
Predicted Secondary structure								.	.	.																																											.
Query SS confidence								.	.	.																																											.
Query Sequence		K	T	G	S	L	Q	.	.	.	G	V	Y	N	L	A	G	F	I	T	T	A	S	G	Q	R	M	A	F	V	Q	Y	L	S	G	Y	A	V	E	P	A	D	Q	R	N	R	R	I	P	L	V	R	.	F	E	S	R	L	Y	K	D	I
Query Conservation								.	.	.																																											.
Alig confidence								.	.	.										.																																	.
Template Conservation																				.
Template Sequence		K	T	G	T	A	R	K	N	K	H	V	A	T	F	I	G	F	A	.	P	A	K	N	P	R	V	I	V	A	V	T	I	D	E	P	T	A	H	G	Y	Y	G	G	V	V	A	G	P	P	F	K	K	I	X	G	G	S	L	N	I	L
Template Known Secondary structure																				.	S	T	T	S														S	S								T															T
Template Predicted Secondary structure																				.
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.		.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions