Job Description P24228 Confidence 100.00% Date Thu Jan 5 11:41:22 GMT 2012 Rank 4 Aligned Residues 431 % Identity 42% Template c3a3eB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) Resolution 2.40 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	D	E	Y	I	T	Q	L	P	A	G	A	N	L	A	L	M	V	Q	K	V	G	A	S	A	P	A	I	D	Y	H	S	Q	Q	M	A	L	P	A	S	T	Q	K	V	I	T	A	L	A	A	L	I	Q	L	G	P	D	F	R	F	T	T	T	L	E	T	K	G	N	V	E	N	G	V	L	K	G	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	S	D	L	T	Q	K	L	P	E	G	S	N	A	G	V	I	A	K	N	I	N	Q	N	Q	I	I	A	D	Y	N	G	S	T	F	M	L	P	A	S	T	Q	K	V	F	T	A	V	A	A	K	L	A	L	G	D	Q	F	Q	F	E	T	A	L	L	S	N	G	K	I	Q	N	G	N	L	D	G	N	L
Template Known Secondary structure								T	T	S		T	T										T	T	T	T							S	T	T			B			G	G	G	G												T		T	T											S		B		S	S				S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	F	G	A	D	P	T	L	K	R	Q	D	I	R	N	M	V	A	T	L	K	K	S	G	V	N	Q	I	D	G	N	V	L	I	D	T	S	I	F	A	S	H	D	K	A	P	G	W	P	W	N	D	M	T	Q	C	F	S	A	P	P	A	A	A	I	V	D	R	N	C	F	S	V	S	L	Y	S	A
Query Conservation
Alig confidence																																											.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	S	F	T	G	D	P	D	L	T	R	G	Q	L	Y	S	L	L	A	E	L	K	K	Q	G	I	K	K	I	N	G	D	L	V	L	D	T	S	V	F	.	.	.	.	.	P	P	A	A	A	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	N	C	F	Y	A	E	L	D	A	N
Template Known Secondary structure									S	S																T	T		S				S								B		.	.	.	.	.				S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure																																											.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.																.	.	.	160	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	P	G	D	M	A	F	I	R	V	A	S	Y	Y	P	V	T	M	F	S	Q	V	R	T	L	P	R	G	S	A	E	A	Q	Y	C	E	L	D	V	V	P	G	D	L	N	R	F	T	L	T	G	C	L	P	Q	R	S	E	P	L	P	L	A	F	A	V	Q	D	G	A	S	Y	A	G	A	I	L	K	D
Query Conservation
Alig confidence																																			.	.
Template Conservation																																			.	.
Template Sequence		K	N	P	G	E	I	V	K	I	N	V	P	A	Q	F	P	I	Q	V	F	G	Q	V	Y	V	A	D	S	N	E	A	P	Y	.	.	C	Q	L	D	V	V	V	H	D	N	N	R	Y	Q	V	K	G	C	L	A	R	Q	Y	K	P	F	G	L	S	F	A	V	Q	N	T	D	A	Y	A	A	A	I	I	Q	R
Template Known Secondary structure		S		S	S	S	B							T	T														S	S	S	S	S	S	.	.									G	G	G												S	S									S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	K	Q	A	G	I	T	W	S	G	T	L	L	R	Q	T	Q	V	N	E	P	G	T	V	V	A	S	K	Q	S	A	P	L	H	D	L	L	K	I	M	L	K	K	S	D	N	M	I	A	D	T	V	F	R	M	I	G	H	A	R	F	N	V	P	G	T	W	R	A	G	S	D	A	V	R	Q	I	L	R
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		Q	L	R	K	L	G	I	E	F	N	G	K	V	.	L	L	P	Q	K	P	Q	Q	G	Q	L	L	A	K	H	L	S	K	P	L	P	D	L	L	K	K	M	M	K	K	S	D	N	Q	I	A	D	S	L	F	R	A	V	A	F	N	Y	Y	K	R	P	A	S	F	Q	L	G	T	L	A	V	K	S	I	L	Q
Template Known Secondary structure						T	T								.				S	S																										T																		S	S		B
Template Predicted Secondary structure															.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	G	V	D	I	G	N	T	I	I	A	D	G	S	G	L	S	R	H	N	L	I	A	P	A	T	M	M	Q	V	L	Q	Y	I	A	Q	H	D	N	E	L	N	F	I	S	M	L	P	L	A	G	Y	D	G	S	L	Q	Y	R	A	G	L	H	Q	A	G	V	D	G	K	V	S	A	K	T	G	S	L
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		K	.	Q	G	I	R	F	G	N	S	I	L	A	D	G	S	G	L	S	R	H	N	L	V	A	P	K	T	M	L	S	V	L	E	Y	I	A	K	N	E	D	K	L	H	L	M	E	T	F	P	I	A	G	V	D	G	T	I	S	G	R	G	G	L	I	S	P	P	L	V	K	N	V	I	A	K	T	G	S	L
Template Known Secondary structure		T	.	T	T				T	T		B				S	S	S			T	T		B	B															T							G	G	G	S		B	T	T	T	S	G	G	G	S	S		G	G	G	S	S	T	T	T	T	T	T
Template Predicted Secondary structure			.
Template SS confidence
		346		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	Y	N	L	A	G	F	I	T	T	A	S	G	Q	R	M	A	F	V	Q	Y	L	S	G	Y	A	V	E	P	A	D	Q	R	N	R	R	I	P	L	V	R	F	E	S	R	L	Y	K	D	I	Y	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	V	Y	N	L	A	G	F	M	T	N	A	R	G	E	K	V	A	F	V	Q	F	I	N	G	Y	S	T	G	D	L	E	S	K	T	K	R	A	P	L	V	Q	F	E	R	N	L	Y	N	E	L	Y	K	Y
Template Known Secondary structure		T	T											T	T	S											S				S		T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.