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Job DescriptionP24228
Confidence99.63%DateThu Jan 5 11:41:22 GMT 2012
Rank46Aligned Residues249
% Identity24%Templatec2xftA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:orf12; PDBTitle: structural and mechanistic studies on a cephalosporin esterase from2 the clavulanic acid biosynthesis pathway
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.........70.........80.........90.........100.
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Query Sequence  NVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDL
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Template Sequence  DVEETLHTPGVQHSVYAVRLTPDGHEVLHASAPERPMPTGAAYKLYLMRALVAEIEK. . . . . . . . . . . . . . . . . . . . . . .
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TTTTSTTS

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   133......140.........150.........160.........170.........180.........
 
   102.......110.........120.........130.........140.........150.........160.........170.........180.
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Query Sequence  VARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSA
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Template Conservation  ...............................
       
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GTVGWDEILTLTPELRSLPTGDMQDLPDGTRV. . . . . . . . . . . . . . . . .
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   190.........200.........210.........220.
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  PKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   262.......270.........280.........290.........300.........310.........320.........330.........340.
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Query Sequence  ELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILR
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Template Conservation  ................................

  
    
  
 
 
   
    
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TVRETAHKMIALSDNTGADLVADRLG. . . . . . . . . . . . . REVVERSLA
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   222.......230.........240....... ..250......
 
   342.......350........ .360.........370..
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Query Sequence  QQAGVDIGNTIIADGSG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSRHNLIAPATMMQ
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Template Conservation   . 
        
                                                            

 
   
Template Sequence  A. AGHHDPSLMRPFLTSHEVFELGWGDPERRAEWVRQDEAGRRELLEKMAGVMTVRGSDLGATVHQLGIDWHMDAFDVVR
Template Known Secondary structure  .T
S
GGGG
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GGG

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GGGT
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   257 ..260.........270.........280.........290.........300.........310.........320.........330.....
 
   373......380.........390.........400.........410.........420.........430.........440.........450..
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Query Sequence  VLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVEP
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Template Sequence  VLEGLLQDSGRDTSGTVEEILTAYPGL. . . . . LIDEERWRRVYFKAGSSPGVMMFCWLLQDHAGISYVLVLRQSA. . . DE
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   336...340.........350.........360.. .......370.........380.........390.........400..... ..
 
   453......460.........470.....
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Query Sequence  ADQRNRRIPLVRFESRLYKDIYQ
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Template Conservation           
  
   
      
Template Sequence  QRLIGDGLFLRGIGAKIIEAEAK
Template Known Secondary structure  GGGTTTST
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   408.410.........420.........430
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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