Job Description P24228 Confidence 97.48% Date Thu Jan 5 11:41:22 GMT 2012 Rank 61 Aligned Residues 167 % Identity 16% Template c2wadB_ PDB info PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Resolution 2.18 Å

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		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.						.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.																		.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	I	M	L	K	K	S	D	N	M	I	A	D	T	V	F	R	M	I	G	H	A	R	F	N	.	.	.	.	.	V	P	G	T	W	R	A	G	S	D	A	V	R	Q	I	L	R	Q	Q	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	G	N	T	I	I	A	D	G
Query Conservation																												.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.																	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		A	V	E	A	L	E	Y	S	S	N	A	Y	V	V	Q	T	A	L	G	I	M	G	Q	T	Y	Q	P	N	M	F	V	G	T	S	N	L	E	S	A	M	G	K	L	R	S	T	F	.	G	E	Y	G	L	G	S	A	T	G	I	D	L	P	D	E	S	T	G	L	V	P	K	E	Y	N	F	A	N	F	I	T
Template Known Secondary structure									T													T	T					T	T	B					T	T													.		T	T	T	T	T	S					S	S	S						B			S	S
Template Predicted Secondary structure																																																	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.																																									.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	L	S	R	H	N	L	I	A	P	A	T	M	M	Q	V	L	Q	Y	I	A	Q	H	D	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	F	I	S	M	L	P	L	A	G	Y	D
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	F	G	Q	F	D	N	Y	T	P	M	Q	L	A	Q	Y	V	A	T	I	A	N	N	G	V	R	L	A	P	H	I	V	E	G	I	Y	D	N	N	D	K	G	G	L	G	E	L	I	Q	A	I	D	T	K	E	I	N	K	V	N	I	S	E	S	D	M	A	I	L	H	Q	G	F	Y	Q	V	S	H	G
Template Known Secondary structure			T	T	T	S	S	S	B	B														T	T	T						B	S									T	T	S	S																	S	S
Template Predicted Secondary structure
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	L	Q	Y	R	A	G	L	H	Q	A	G	V	D	G	K	V	S	A	K	T	G	S	L	Q	G	V	Y	N	L	A	G	F	I	T	T	A	S	G	Q	R	M	A	F	V	Q	Y	L	S	G	Y	A	V	E	P	A	D	Q	R	N	R	R	I	P	L	V	R	F	E	S	R	L	Y	K	D	I	Y	Q	N
Query Conservation
Alig confidence																										.	.	.									.																							.	.	.	.	.	.
Template Conservation																										.	.	.									.																							.	.	.	.	.	.
Template Sequence		T	S	P	L	T	T	G	R	A	F	S	D	G	A	T	V	S	I	S	G	K	T	G	T	.	.	.	N	T	N	A	V	A	Y	A	.	P	T	E	N	P	Q	I	A	V	A	V	V	F	P	H	N	T	N	L	T	K	N	.	.	.	.	.	.	V	G	P	A	I	A	R	D	I	I	N	L	Y	N	Q	H
Template Known Secondary structure			S	T	T				G	G	G	T	T	T		S	S									.	.	.									.	S	T	T	S										T	T				S	S			.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.									.																							.	.	.	.	.	.
Template SS confidence
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.				.	620	.	.	.	.	.	.		.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.							.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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