Return to main results Retrieve Phyre Job Id

Job DescriptionP24228
Confidence99.80%DateThu Jan 5 11:41:22 GMT 2012
Rank37Aligned Residues239
% Identity21%Templatec2bcfA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:probable d-alanyl-d-alanine carboxypeptidase PDBTitle: crystal structure of a evolved putative penicillin-binding2 protein homolog, rv2911, from mycobacterium tuberculosis.
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90.........100.........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  LPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADP
Query Conservation      
  

 
 

  
  
   
      


  

 

 


  



 

 
 
   
    
 
 


 
 
 


Alig confidence 
















































...............................
Template Conservation   
   
 
  
 
  

 

   
       

 


 

   

 
 
...............................
Template Sequence  IPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 



S
STTT
STT

B

GGG

T...............................
Template Predicted Secondary structure 























...............................
Template SS confidence 















































































   37..40.........50.........60.........70.........80.....
 
   110.........120.........130.........140.........150.........160.........170.........180.........
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  TLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSAPKPGDMAF
Query Conservation   
    
  
   
   

  
 
 

 
 
 
        
   
    
 
    
  
 
 
     
         
Alig confidence  ......................

























................................
Template Conservation  ......................   
                  
   ................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . NSTVVADVADTQAECNCVGVKPGRSY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ......................T


TGGG

SS





TT
................................
Template Predicted Secondary structure  ......................
















................................
Template SS confidence 















































































   86...90.........100.........110.
 
   190.........200.........210.........220.........230.........240.........250.........260.........
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  IRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGIT
Query Conservation              
   
                        
 
              
 

           
   

 
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   270.........280.........290.........300.........310.........320.........330.........340.........
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  WSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIG
Query Conservation    
              

   
 

 


  
   


  

 

  

        
   
   
   
    

   
Alig confidence  ........................

























........
















...

Template Conservation  ........................

 


  

  
 
 

  

   
........
       

  
  

...
 
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . TVRQLLDGLLLVSGNDAANTLAHXLG. . . . . . . . GQDVTVAKXNAKAATLG. . . AT
Template Known Secondary structure  ........................S

TT........
T...
T
Template Predicted Secondary structure  ........................




........



...

Template SS confidence 















































































   112.......120.........130....... ..140.........150.... ..
 
   350......... 360.........370.........380.........390.........400.........410 .........420....
Predicted Secondary structure 






...






























.




.
Query SS confidence 









. . .


















































.













.
Query Sequence  NTIIADGSGL. . . SRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGV. DGKVSAKTGSLQGV.
Query Conservation     
 




...

 
  

  
  

              



 
  


  
        . 
 
 





  
.
Alig confidence 









...


















































.













.
Template Conservation   
   
  

      
 


 


 
       
    
                
 
 

     
 
 


 
  

Template Sequence  STHATTPSGLDGPGGSGASTAHDLVVIFRAAXANPVFAQIIAEPSAXFPSDEQLIVNQDELLQRYPGAIGGKTGYTNAAR
Template Known Secondary structure  T
B
SSSSSS
BTTBS
BB
S
S






TSTTTTT
Template Predicted Secondary structure 





































Template SS confidence 















































































   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   425....430.........440.........450.........460.........470......
Predicted Secondary structure 











Query SS confidence 



















































Query Sequence  YNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQN
Query Conservation   





    
    


  
               
       
  
   
Alig confidence 







.




















.......














Template Conservation     
  
 .  
   
 

           .......
      
 
 

  
Template Sequence  KTFVGAAA. RGGRRLVIAXXYGLVKEGGPT. . . . . . . YWDQAATLFDWGFAL
Template Known Secondary structure  .TT


TT


.......S
Template Predicted Secondary structure 
.









.......
Template SS confidence 



















































   239240...... ...250.........260....... ..270.........280..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions