Return to main results Retrieve Phyre Job Id

Job DescriptionP24228
Confidence96.21%DateThu Jan 5 11:41:22 GMT 2012
Rank66Aligned Residues70
% Identity17%Templatec1qmfA_
PDB info PDB header:peptidoglycan synthesisChain: A: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp-2x) acyl-enzyme complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30... ......40.........50 .........60.........70..
Predicted Secondary structure 




.......





......................







Query SS confidence 











. . . . . . .
















. . . . . . . . . . . . . . . . . . . . . .





















Query Sequence  NVDEYITQLPAG. . . . . . . ANLALMVQKVGASAPAI. . . . . . . . . . . . . . . . . . . . . . DYHSQQMALPASTQKVITALAA
Query Conservation       
      .......
  

 
 

  
  
 ......................  
      


  

 

 

Alig confidence 











.......
















......................





















Template Conservation   

   
  
           
  

 
  

 



 
 
 



            
 
      





  
 


Template Sequence  PLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAA
Template Known Secondary structure 

STTT
BS


TTT
TT

TT




TTTS

B

GGGG
Template Predicted Secondary structure 



































Template SS confidence 















































































   268.270.........280.........290.........300.........310.........320.........330.........340.......
 
   73.. ....80.........90.
Predicted Secondary structure  ..






Query SS confidence 


. .















Query Sequence  LIQ. . LGPDFRFTTTLETKGN
Query Conservation 
  ..



 

 
 
   
 
Alig confidence 


..















Template Conservation 

 
                 
Template Sequence  IDNNTFPGGEVFNSSELKIAD
Template Known Secondary structure  TT


TT

S
SSS
Template Predicted Secondary structure 









Template SS confidence 




















   348.350.........360........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions