 |
Job Description | P69330 | Confidence | 3.68% | Date | Thu Jan 5 12:11:21 GMT 2012 |
Rank | 82 | Aligned Residues | 23 |
% Identity | 22% | Template | c1smyB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:dna-directed rna polymerase alpha chain; |
PDBTitle: structural basis for transcription regulation by alarmone2 ppgpp
|
Resolution | 2.70 Å |
|
  |   |
41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | G | D | A | I | R | T | T | I | L | D | V | L | A | R | Y | N | V | R | G | V | Q | L |
Query Conservation |   |
|
|   |   |
|
|   |   |
|   |
|   |
|   |   |   |
|
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |
|
Template Sequence |   |
L | G | N | P | L | R | R | I | L | L | S | S | I | P | G | T | A | V | T | S | V | Y | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|