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Job DescriptionQ46857
Confidence100.00%DateThu Jan 5 12:35:17 GMT 2012
Rank35Aligned Residues260
% Identity27%Templatec3lutA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20..... ....30.........40.........50.. .......60.........70.......
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Query Sequence  VIKLQDGNVMPQLGLGVWQA. . . . . SNEEVITAIQKALEVGYRSIDTAAAYK. . . NEEGVGKALKNASVNREELFITTKL
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Template Sequence  RNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI
Template Known Secondary structure  STTSS
S
TT




S
TT

TTGGGGT

GGG
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   40.........50.........60.........70.........80.........90.........100.........110.........
 
   78.80. ........90.........100.........110.........120.........130.........140........
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Query Sequence  WNDD. . . . . . . . . HKRPREALLDSLKKLQLDYIDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRL
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Template Sequence  FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTP. MEETVRAMTHVINQGMAMYWGTSRWSSMEIMEA
Template Known Secondary structure  SB

SSGGGBSS
T
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TTS
.TTSS

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   120.........130.........140.........150.........160..... ....170.........180.........190........
 
   149150... ......160........ .170.........180.........190....
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Query Sequence  IDETG. . . . VTPVINQIELHPLMQ. . . QRQLHAWNATHKIQTESWSPLAQGGK. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKIL
Template Known Secondary structure  T





BTTB
T


TTGGGGGGTTTTTS

TTSGGGSTT
T
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   199200.........210.........220.........230.........240.........250.........260.........270........
 
   195....200.........210.........220....... ..230.........240....... ..250.........260....
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Query Sequence  . . . . . . GVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLV. . VIPKSVTPSRIAENFDVWDF. . RLDKDELGEIAKLDQGK
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Template Sequence  SEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNK
Template Known Secondary structure  STTS
TSTT

SSTGGG




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   279280.........290.........300.........310.........320.........330.........340.........350........
 
   265.
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Query Sequence  RL
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Template Sequence  PY
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   359360
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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