 |
Job Description | Q46857 | Confidence | 26.80% | Date | Thu Jan 5 12:35:17 GMT 2012 |
Rank | 63 | Aligned Residues | 106 |
% Identity | 14% | Template | c2ylaA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; |
PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis
|
Resolution | 2.70 Å |
|
 |
  |   |
25 | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | S | N | E | E | V | I | T | A | I | Q | K | A | L | E | V | G | Y | R | S | I | D | T | A | A | A | Y | K | N | E | E | G | V | G | K | A | L | K | N | A | S | V | N | R | E | E | L | F | I | T | T | K | L | W | N | D | D | H | K | R | P | R | E | A | L | L | D | S | L | K | K | L | Q | L | D | Y | I | D | L | Y |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|   |
|
|
|
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |
|
|
|   |
|
|   |   |
|
|
|   |
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |
|
Template Sequence |   |
L | T | Q | A | E | V | T | E | L | I | E | Y | A | K | S | K | D | I | G | L | I | P | A | I | N | S | P | G | H | M | D | A | M | L | V | A | M | E | K | L | G | I | K | N | P | Q | A | H | F | . |
D | K | V | S | K | T | T | M | D | L | K | N | E | E | A | M | N | F | V | K | A | L | I | G | K | Y | M | D | F | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  |  | S | S | S |
|  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  | S | . | S | S |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
714 | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | |
. | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . |
  |
  |   |
|
|
|
|
|
105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |
Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
L | M | H | W | P | V | P | A | I | D | H | Y | V | E | A | W | K | G | M | I | E | L | Q | K | E | G | L |
Query Conservation |   |
. | . | . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | G | K | T | K | I | F | N | F | G | T | D | Q | Y | A | N | D | A | T | S | A | Q | G | W | Y | Y | L | K | W | Y | Q | L |
Template Known Secondary structure |   |
B | T | T | B | S |  |  |  |  |  |
|
| S | T | T |  |  |  |  | T | S |
|  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
793 | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | . | . | . | . | . | . | 820 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|