Job Description P80644 Confidence 57.91% Date Thu Jan 5 12:33:13 GMT 2012 Rank 200 Aligned Residues 117 % Identity 19% Template c3tozA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad. Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																				.	.	.	.	.	60	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	I	T	L	A	G	S	P	R	F	P	S	R	S	S	S	L	L	E	Y	A	R	E	K	L	N	G	L	D	V	E	V	Y	H	W	N	L	Q	N	F	A	P	E	D	L	L	Y	A	R	F	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	K	T	F	T	E
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		E	L	I	G	L	I	A	T	P	I	R	H	S	L	S	P	T	M	H	N	E	A	F	A	K	L	.	G	L	D	Y	V	Y	L	A	F	E	V	G	D	K	E	L	K	D	V	V	Q	G	F	R	A	M	N	L	R	G	W	N	V	S	M	P	N	K	T	N	I	H	K	Y	L	D	K	L	S	P	A	A	E
Template Known Secondary structure									S	S		T	T		S													.	T																									T	T								T	T	S	T	T	T	G	G	G	G		S
Template Predicted Secondary structure																												.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		Q	L	Q	Q	A	D	G	L	I	V	A	T	P	V	Y	K	A	.	.	.	A	Y	S	G	A	L	K	T	L	L	D	L	L	P	E	R	A	L	Q	G	K	V	V	L	P	L	A	T	G	G	T	V	A	H	L	L	A	V	D	Y	A	L
Query Conservation																			.	.	.
Alig confidence																			.	.	.																.	.
Template Conservation																																					.	.
Template Sequence		L	V	G	A	V	N	T	V	V	N	D	D	G	V	L	T	G	H	I	T	D	G	T	G	Y	M	R	A	L	K	E	A	G	H	D	.	.	I	I	G	K	K	M	T	I	C	G	A	G	G	A	A	T	A	I	C	I	Q	A	A	L	D
Template Known Secondary structure				T			S						T	T																			T	T			.	.		T	T	S								S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions