Job Description P80644 Confidence 82.95% Date Thu Jan 5 12:33:13 GMT 2012 Rank 107 Aligned Residues 67 % Identity 19% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.
Query Sequence		M	R	V	I	T	L	A	G	S	P	R	F	P	S	R	S	S	S	L	L	E	Y	A	R	E	K	L	N	G	L	D	V	E	V	Y	H	W	N	L	Q	N	F	A	P	E	D	L	L	Y	A	R	F	D	.	.	.	.	.	.	.	S	P	A	L	K	T	F	T	E	Q	L	Q	Q	A	D	G	L	I	V	A
Query Conservation																																																							.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.
Template Sequence		M	K	V	I	I	I	G	G	E	.	.	.	.	.	.	.	.	T	T	A	Y	Y	L	A	R	S	M	L	S	R	K	Y	G	V	V	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V	I	L
Template Known Secondary structure											.	.	.	.	.	.	.	.													T	T								S												S	S	S					S		T	T	S								T			T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.									10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		74	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		73	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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