Job Description P80644 Confidence 99.08% Date Thu Jan 5 12:33:13 GMT 2012 Rank 53 Aligned Residues 153 % Identity 14% Template c2wc1A_ PDB info PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Resolution 2.17 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		M	R	.	V	I	T	L	A	G	S	P	R	F	P	S	R	S	S	S	L	L	E	Y	A	R	E	K	L	N	G	L	D	V	E	V	Y	H	W	N	L	Q	N	F	A	P	E	D	L	L	Y	A	R	F	D	S	P	A	L	K	T	F	T	E	Q	L	Q	Q	A	D	G	L	I	V	A	T	P	V	Y	K	A
Query Conservation				.
Alig confidence				.								.	.																			.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																			.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	K	I	G	L	F	F	G	S	.	.	D	T	G	T	T	R	K	I	A	K	Q	I	K	D	M	F	D	D	.	E	V	M	A	K	P	L	N	V	N	R	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	F	M	A	Y	D	F	L	I	L	G	T	P	T	L	G	D
Template Known Secondary structure				S								.	.	S	S	S											T	T	S		T	.	T	T	B						G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S									B	T	T
Template Predicted Secondary structure												.	.																			.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.																		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		80	.	.	.										.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		A	Y	S	G	.	.	.	.	.	.	.	.	.	A	L	K	T	L	L	D	L	L	P	E	R	A	L	Q	G	K	V	V	L	P	L	A	T	G	G	T	V	A	.	.	.	H	L	L	A	V	D	Y	A	L	K	P	V	L	S	A	L	K	A	Q	E	I	L	H	G	V	F	A	D	D	S	Q	V	I	D	Y
Query Conservation						.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation
Template Sequence		G	Q	L	P	G	L	S	A	N	A	A	S	E	S	W	E	E	F	L	P	R	I	A	D	Q	D	F	S	G	K	T	I	A	L	F	G	L	G	D	Q	V	T	Y	P	L	E	F	V	N	A	L	F	F	L	H	E	F	F	S	D	R	G	A	N	V	V	G	R	W	P	A	K	G	Y	G	F	E	D	S	L
Template Known Secondary structure		T	B		S	S	G	G	G	T		S	S							G	G	G	G	T	T				T	T											T	T	T		T	T	S	T	T	T											T	T	T										T	T	S			S			T
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		148												.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	.	.	.	.	.	.	.	.	.	.	.	H	R	P	Q	F	T	P	N	L	Q	T	R	L	D	T	A	L	E	T	F	W	Q	A	L	H
Query Conservation			.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	V	E	G	E	F	L	G	L	A	L	D	Q	D	N	Q	A	A	L	T	P	E	R	L	K	G	W	L	S	L	I	A	A	D	F	G
Template Known Secondary structure		T			T	T			S	S					T	T	T		G	G	G												T					T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions