Job Description P80644 Confidence 35.99% Date Thu Jan 5 12:33:13 GMT 2012 Rank 306 Aligned Residues 118 % Identity 19% Template c2q4dB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 Resolution 2.15 Å

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		1	.	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																														.	.	.	.	.	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	V	I	T	L	A	G	S	P	R	.	.	F	P	S	R	S	S	S	L	L	E	Y	A	R	E	K	L	N	G	L	D	V	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	H	W	N	L	Q	N	F	A	P	E	D	L	L	Y
Query Conservation													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	K	I	C	V	F	C	G	S	H	S	G	H	R	E	V	F	S	D	A	A	I	E	L	G	N	E	L	V	K	R	K	I	D	L	V	Y	G	G	G	S	V	G	L	X	G	L	I	S	R	R	V	Y	E	G	G	L	H	V	L	G	I	I	P	K	A	L	X	P	I	E	I	S	G	E	T	V	G	D
Template Known Secondary structure			S								S				S	S																	T	T									S	S														S	S							B	G	G	G							S	S			S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		A	R	F	D	S	P	A	L	K	T	F	T	E	Q	L	Q	Q	A	D	G	L	I	V	A	T	P	V	Y	K	A	A	Y	S	G	A	L	K	T	L	L	D	L	L	.	.	P	E	R	A	L	Q	G	K	V	V	L	P	L	A	T	G	G	T	V	A	H	L	L	A	V	D	Y	A	L	K	P
Query Conservation																																													.	.
Alig confidence																										.	.	.	.	.															.	.
Template Conservation																										.	.	.	.	.
Template Sequence		V	R	V	V	A	D	X	H	E	R	K	A	A	X	A	Q	E	A	E	A	F	I	A	L	.	.	.	.	.	P	G	G	Y	G	T	X	E	E	L	L	E	X	I	T	W	S	Q	L	G	I	H	K	K	T	V	G	L	L	N	V	D	G	Y	Y	N	N	L	L	A	L	F	D	T	G	V	E
Template Known Secondary structure					B	S	S											T		S	B					.	.	.	.	.	S		S																	T	S										G	G	G	T	T
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions