Job Description P80644 Confidence 54.24% Date Thu Jan 5 12:33:13 GMT 2012 Rank 226 Aligned Residues 119 % Identity 16% Template c2ev9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from thermus2 thermophilus hb8 in complex with nadp(h) and shikimate Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																			.	.	.	.	.	60	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	V	I	T	L	A	G	S	P	R	F	P	S	R	S	S	S	L	L	E	Y	A	R	E	K	L	N	G	L	D	V	E	V	Y	H	W	N	L	Q	N	F	A	P	E	D	L	L	Y	A	R	F	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	K	T	F	T	E
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		M	L	R	F	A	V	L	G	H	P	V	A	H	S	L	S	P	A	M	H	A	F	A	L	E	S	L	.	G	L	E	G	S	Y	E	A	W	D	T	P	L	E	A	L	P	G	R	L	K	E	V	R	R	A	F	R	G	V	N	L	T	L	P	L	K	E	A	A	L	A	H	L	D	W	V	S	P	E	A	Q
Template Known Secondary structure										S	S		T	T		S												T	.	T												G	G	G													S						T	T	S	S	S	T	T	G	G	G	S	S
Template Predicted Secondary structure																													.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		Q	L	Q	Q	A	D	G	L	I	V	A	T	P	V	Y	K	A	A	Y	S	G	A	L	K	T	L	L	D	L	L	P	E	R	A	L	Q	.	G	K	V	V	L	P	L	A	T	G	G	T	V	A	H	L	L	A	V	D	Y	A	L
Query Conservation																																						.
Alig confidence													.																									.
Template Conservation													.
Template Sequence		R	I	G	A	V	N	T	V	L	Q	V	.	E	G	R	L	F	G	F	N	T	D	A	P	G	F	L	E	A	L	K	A	G	G	I	P	L	K	G	P	A	L	V	L	G	A	G	G	A	G	R	A	V	A	F	A	L	R	E	A
Template Known Secondary structure				T									.	T	T																			T	T					S								S													T
Template Predicted Secondary structure													.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions