Job Description P80644 Confidence 31.94% Date Thu Jan 5 12:33:13 GMT 2012 Rank 344 Aligned Residues 114 % Identity 16% Template c1nvtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5'-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+ Resolution 2.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																				50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	I	T	L	A	G	S	P	R	F	P	S	R	S	S	S	L	L	E	Y	A	R	E	K	L	N	G	L	D	V	E	V	Y	H	W	N	L	Q	N	F	A	P	E	D	L	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	F	D	S	P	A	L	K	T	F	T	E
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		K	V	I	G	L	I	G	H	P	V	E	H	S	F	S	P	I	M	H	N	A	A	F	K	D	K	.	G	L	N	Y	V	Y	V	A	F	D	V	L	P	E	N	L	K	Y	V	I	D	G	A	K	A	L	G	I	V	G	F	N	V	T	I	P	H	K	I	E	I	M	K	Y	L	D	E	I	D	K	D	A	Q
Template Known Secondary structure									S	S		T	T		S												T	.	T												G	G	G	G	G	G									T								T	T	S	T	T	G	G	G	G	G		S
Template Predicted Secondary structure																												.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		63	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		Q	L	Q	Q	A	D	G	L	I	V	.	.	.	A	T	P	V	Y	K	A	A	Y	S	G	A	L	K	T	L	L	D	L	L	P	E	R	A	L	Q	G	K	V	V	L	P	L	A	T	G	G	T	V	A	H	L	L	A	V	D
Query Conservation												.	.	.
Alig confidence												.	.	.																							.	.
Template Conservation																																					.	.
Template Sequence		L	I	G	A	V	N	T	I	K	I	E	D	G	K	A	I	G	Y	N	T	D	G	I	G	A	R	M	A	L	E	E	E	I	G	R	.	.	V	K	D	K	N	I	V	I	Y	G	A	G	G	A	A	R	A	V	A	F	E	L
Template Known Secondary structure				T									T	T																							.	.			S									S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions