Job Description P15028 Confidence 88.77% Date Thu Jan 5 11:34:12 GMT 2012 Rank 27 Aligned Residues 228 % Identity 8% Template c2xdqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex Resolution 2.40 Å

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		34	.	.	.	.	.	40	.	.	.	.													.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	T	P	Q	R	I	V	V	L	E	.	.	.	.	.	.	.	.	.	.	.	.	L	S	F	A	D	A	L	A	A	V	D	V	I	P	I	G	I	A	D	D	N	D	A	K	R	I	L	P	E	V	R	A	H	L	K	P	W	Q	S	V	G	T	R	A	Q	P	S	L	E	A	I	A	A	L	K	P	D
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	P	T	P	S	V	N	I	I	G	I	T	T	L	G	F	H	N	Q	H	D	C	R	E	L	K	Q	L	M	A	D	L	G	I	Q	V	N	L	V	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	A	T	V	H	D	L	Q	R	L	P	Q	A	W	F	N
Template Known Secondary structure				S	S										T	T		T	T																T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T	T	G	G	G	G	G	G	S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	I	A	D	S	S	R	H	A	G	V	Y	I	A	L	Q	Q	I	A	P	V	L	L	L	K	S	R	N	E	T	Y	A	E	N	L	Q	S	A	A	I	I	G	E	M	V	G	K	K	R	E	M	Q	A	R	L	E	Q	H	K	E	R	M	A	Q	W	A	S	Q	L	P	K	G	T	R	V	A	F	G	T
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		L	V	P	.	Y	R	E	I	G	G	L	T	A	Q	Y	L	E	R	E	F	G	Q	P	S	V	R	I	T	P	M	G	V	V	E	T	A	R	C	I	R	A	I	Q	G	V	L	N	A	Q	G	A	G	V	N	Y	E	A	F	I	E	Q	Q	T	R	E	V	S	Q	A	A	W	F	S	R	S	I	D	C	Q	N
Template Known Secondary structure					.		T	T	S	S																						S																	T	T	T																T									S					T
Template Predicted Secondary structure					.
Template SS confidence
		219	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.																						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	E	Q	Q	F	N	L	H	T	Q	E	T	W	T	G	S	V	L	.	.	.	.	A	S	L	G	L	N	V	P	A	A	M	A	G	A	S	M	P	S	I	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	L	L	A	V	N	P	A	W	L	L	V	A	H
Query Conservation																					.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		L	T	G	K	K	A	V	V	F	G	D	N	T	H	A	A	A	M	T	K	I	L	S	R	E	M	G	I	H	V	V	W	A	G	T	Y	C	K	Y	D	A	D	W	F	R	A	E	V	A	G	F	C	D	E	V	L	I	T	D	D	H	T	V	V	G	D	A	I	A	R	V	E	P	A	A	I	F	.	.	.
Template Known Secondary structure		T	T	T																																	S		G	G	G									T	T	T	S	S																					S				.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		Y	R	E	E	S	I	V	K	R	W	Q	Q	D	P	L	W	Q	M	L	T	A	A	Q	K	Q	Q	V	A	S	V	D	S	N	T	W	A	R	M	R	.	.	G	I	F	A	A	E	R	I	A	A	D	T	V	K	I	F
Query Conservation																																									.	.
Alig confidence		.	.											.	.	.																									.	.
Template Conservation		.	.											.	.	.
Template Sequence		.	.	G	T	Q	M	E	R	H	V	G	K	.	.	.	R	L	N	I	P	C	G	V	I	A	A	P	I	H	I	Q	D	F	P	V	G	Y	R	P	F	L	G	Y	E	G	T	N	Q	L	V	D	L	I	Y	N	S	F
Template Known Secondary structure		.	.											.	.	.			T							S	S	S			G	G	G	S		S	S				S	S
Template Predicted Secondary structure		.	.											.	.	.
Template SS confidence
				375	.	.	.	.	380	.	.	.	.				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions