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Job DescriptionP15028
Confidence100.00%DateThu Jan 5 11:34:12 GMT 2012
Rank13Aligned Residues246
% Identity17%Templatec2r7aC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50........ .60.........70.........80.........90.........100.........110 ....
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Query Sequence  QRIVVLELSFADALAAVDVIP. . IGIADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDLIIADSSRH. AGVY
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Template Sequence  ERIVVAGGSLTELIYAMGAGERVVGVDETTS. . . . . . . YPPETAKLPHIGYWKQLSSEGILSLRPDSVITWQDAGPQIVL
Template Known Secondary structure 

STT
GGG
TT

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SGGGTTS
B
SBTTB

TT

STT
S
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   24.....30.........40.........50.... .....60.........70.........80.........90......
 
   115....120. ........130.........140.........150.........160.........170.. .......180.........
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Query Sequence  IALQQIA. PVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQHKERMAQWASQLP. . . . KGTRVAFGTSREQQFNL
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Template Sequence  DQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVPEQGDALVTQINQRLERVQQNVAAKKAPVKAMFILSAGGSAPQV
Template Known Secondary structure  TT



S

TT
SSS


TT


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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   190.........200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  HTQETWTGSVLASLGLNVPAAMAGASMPSIGLEQLLAVNPAWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVASVDSN
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Template Sequence  AGKGSVADAILSLAGAENVATHQQ. . YKSYSAESLIAANPEVIVVTSQMVDGDINRLRSIAGITHTAAWKNQRIITVDQN
Template Known Secondary structure 
BTST


SBS..




STT
GGGGGGSTTGGGSTT

GG
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   177..180.........190.........200 .........210.........220.........230.........240.........250....
 
   270.........280.........290....
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Query Sequence  TWARMRGIFAAERIAADTVKIFHHQ
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Template Sequence  LILG. MGPRIADVV. ESLHQQLWPQ
Template Known Secondary structure  GSSS.

TT.S

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   255... .260....... ..270.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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