Job Description P15028 Confidence 100.00% Date Thu Jan 5 11:34:12 GMT 2012 Rank 9 Aligned Residues 250 % Identity 19% Template c2r79A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa Resolution 2.40 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.
Predicted Secondary structure																								.	.																																																				.
Query SS confidence																								.	.																																																				.
Query Sequence		P	Q	R	I	V	V	L	E	L	S	F	A	D	A	L	A	A	V	D	V	I	P	.	.	I	G	I	A	D	D	N	D	A	K	R	I	L	P	E	V	R	A	H	L	K	P	W	Q	S	V	G	T	R	A	Q	P	S	L	E	A	I	A	A	L	K	P	D	L	I	I	A	D	S	S	R	.	H	A	G	V
Query Conservation																								.	.																																																				.
Alig confidence																								.	.									.	.	.	.	.	.	.																																					.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		P	Q	R	W	V	S	A	G	G	S	L	S	E	W	V	V	A	L	G	G	E	S	K	L	V	G	V	D	T	T	S	Q	.	.	.	.	.	.	.	H	P	Q	A	L	K	Q	L	P	S	V	G	Y	Q	R	Q	L	A	A	E	G	V	L	A	L	R	P	D	I	L	I	G	T	E	E	M	G	P	P	P	V
Template Known Secondary structure				S					S										T	T		G	G	G						T	T			.	.	.	.	.	.	.		S	G	G	G	G	G	S		B				G	G	G								T	T			S						T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		Y	I	A	L	Q	Q	I	A	P	V	L	L	L	K	S	R	N	E	T	Y	A	E	N	L	Q	S	A	A	I	I	G	E	M	V	G	K	K	R	E	M	Q	A	R	L	E	Q	H	K	E	R	M	A	Q	W	A	S	Q	L	P	K	G	.	.	.	.	.	.	.	T	R	V	A	F	G	T	S	R	E	Q	Q
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	Q	L	E	G	A	G	V	R	V	E	T	L	S	A	K	P	D	L	E	A	L	E	S	N	L	K	K	L	G	D	W	L	G	V	P	Q	R	A	E	A	A	E	L	D	Y	R	Q	R	L	R	R	Q	A	D	W	I	A	A	A	Q	K	S	Q	P	A	P	G	V	L	L	V	I	G	N	A	G	G	Q
Template Known Secondary structure								T	T										S	S																T																											T	T	T	S												T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		F	N	L	H	T	Q	E	T	W	T	G	S	V	L	A	S	L	G	L	N	V	P	A	A	M	A	G	A	S	M	P	S	I	G	L	E	Q	L	L	A	V	N	P	A	W	L	L	V	A	H	Y	R	.	.	.	E	E	S	I	V	K	R	W	Q	Q	D	P	L	W	Q	M	L	T	A	A	Q	K	Q	Q	V
Query Conservation																																																						.	.	.
Alig confidence																													.	.																								.	.	.
Template Conservation																													.	.
Template Sequence		L	L	V	A	G	R	N	T	G	G	D	W	V	L	N	R	A	G	A	R	N	L	A	T	H	E	G	.	.	Y	K	P	I	S	V	E	A	L	A	A	L	D	P	V	A	V	V	I	A	D	R	S	L	E	G	D	A	A	R	A	A	L	L	K	Q	N	P	G	L	A	P	T	R	A	A	R	D	G	R	L
Template Known Secondary structure							B	S	S									T	T							S	B	S	.	.															S							S	S															G	G	G	T	T	S					T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	V	D	S	N	T	W	A	R	M	R	G	I	F	A	A	E	R	I	A	A	D	T	V	K	I	F	H	H	Q	P	L
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		L	V	L	D	P	T	L	L	V	G	G	L	G	P	R	L	P	D	G	L	.	A	A	L	S	A	A	F	Y	P	S	A	K
Template Known Secondary structure						G	G	G	G	S	S	S	S		T	T						.									T	T	S
Template Predicted Secondary structure																						.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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