Job Description P15028 Confidence 37.14% Date Thu Jan 5 11:34:12 GMT 2012 Rank 44 Aligned Residues 221 % Identity 14% Template c2ov3A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound Resolution 2.40 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.
Predicted Secondary structure																																																															.														.
Query SS confidence																																																															.														.
Query Sequence		R	I	V	V	L	E	L	S	F	A	D	A	L	A	A	V	D	V	I	P	I	G	I	A	D	D	N	D	A	K	R	I	L	P	E	V	R	A	H	L	K	P	W	Q	S	V	G	T	R	A	Q	P	S	L	E	A	I	A	A	L	K	.	P	D	L	I	I	A	D	S	S	R	H	A	G	.	V	Y	I	A
Query Conservation																																																															.														.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.															.														.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	T	V	S	I	P	P	Q	Q	Y	F	L	E	K	I	G	G	D	L	V	R	V	S	V	L	V	P	G	N	N	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	Y	E	P	K	P	Q	Q	L	A	A	L	S	E	A	E	A	Y	V	L	I	G	L	G	F	E	Q	P	W	L	E	K
Template Known Secondary structure						S	S												G	G	G						S	S		T	T	S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G											G	G	G		S							T	T	S	S	T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.															.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.																					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.										150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	Q	I	A	P	V	L	L	L	K	S	R	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	A	E	N	L	Q	S	A	A	I	I	G	E	M	V	G	K	.	.	.	.	.	.	.	.	.	K	R	E	M	Q	A	R	L	E	Q	H	K	E	R	M	A	Q	W
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	A	A	N	A	N	M	K	L	I	D	S	A	Q	G	I	T	P	L	E	M	P	G	R	L	M	V	A	D	P	H	I	W	L	S	P	T	L	V	K	R	Q	A	T	T	I	A	K	E	L	A	E	L	D	P	D	N	R	D	Q	Y	E	A	N	L	A	A	F	L	A	E	L	E	R	L	N	Q	E	L
Template Known Secondary structure							S	S	S					T	T	T	T					B		S	S	S	T	T	S	B				G	G	G																					G	G	G
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																								.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.
Query Sequence		A	S	Q	L	P	K	G	T	R	V	A	F	G	T	S	R	E	Q	Q	F	N	L	H	T	Q	E	T	W	T	G	S	V	L	A	S	L	G	L	N	V	P	A	A	M	A	G	A	S	M	P	S	I	G	L	.	.	.	.	.	E	Q	L	L	A	V	N	P	A	W	L	L	V	A	H	Y	R	E	E	S	I
Query Conservation																																																								.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Q	I	L	Q	P	L	P	Q	R	K	F	I	V	.	.	.	.	.	.	.	.	.	.	F	H	P	S	W	A	Y	F	A	R	D	Y	N	L	V	Q	I	P	I	E	V	E	G	Q	E	P	S	A	Q	E	L	K	Q	L	I	D	T	A	K	E	N	N	L	T	M	V	F	G	E	T	Q	F	S	T	K	S
Template Known Secondary structure						T	T		S							.	.	.	.	.	.	.	.	.	.	S	S										T	T						S			S	S	S				T	T													T								T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.											.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	R	W	Q	Q	D	P	L	W	Q	M	L	T	A	A	Q	K	Q	Q	V	A	S	V	D	S	N	T	W	A	R	M	R	G	I	F	A	A	E	R	I	A	A	D	T	V	K	I	F	H	H	Q	P
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.								.	.	.
Template Sequence		S	E	A	I	A	A	E	I	G	A	.	.	.	.	.	.	.	.	.	G	V	E	L	L	D	P	.	.	.	L	A	A	D	W	S	S	N	L	K	A	V	A	Q	K	I	A	N	A	N	S	A	Q	P
Template Known Secondary structure										T		.	.	.	.	.	.	.	.	.							T	.	.	.	T		S	S																	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.										.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions