Job Description P37657 Confidence 12.79% Date Thu Jan 5 11:56:30 GMT 2012 Rank 46 Aligned Residues 116 % Identity 16% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		52	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		E	T	A	H	V	A	V	I	S	M	D	S	.	D	P	A	K	I	F	Q	L	D	D	S	Q	G	P	E	K	I	K	L	F	S	M	L	N	H	E	K	G	L	Y	Y	L	T	R	D	L	Q	C	S	I	D	P	H	N	Y	L	F	I	L	V	C	A	N	N	A	W	Q	N	I	P	A	E	R	L	R	S	W
Query Conservation														.
Alig confidence														.																																																					.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	.	.	.	G	R	L	Q	I	D	E	P	L	M	G	E
Template Known Secondary structure		T	T										S	S																T								T	T																		T		S								.	.	.			S	S
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	D	K	M	N	K	W	S	R	L	N	H	C	S	L	L	V	I	N	P	G	N	N	N	D	K	Q	F	S	L	L	L	E	E	Y	R	.	S	L	F	G	L
Query Conservation																																						.
Alig confidence								.																														.
Template Conservation								.
Template Sequence		L	A	R	L	K	E	.	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L
Template Known Secondary structure								.					S								S	S	S		S													S
Template Predicted Secondary structure								.
Template SS confidence
		202	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions