Job Description P37657 Confidence 8.18% Date Thu Jan 5 11:56:30 GMT 2012 Rank 84 Aligned Residues 143 % Identity 16% Template c1t4gA_ PDB info PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: atpase in complex with amp-pnp Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																		.	.	.	.	.	.	.	.	60	.	.	.			.	.	.
Predicted Secondary structure																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		P	V	F	S	I	G	I	S	S	L	W	D	E	L	R	.	H	M	P	A	G	G	V	W	W	F	N	V	D	R	H	E	D	A	I	S	L	A	N	Q	T	I	A	S	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	A	H	V	A	V	I	S	M	D	S	.	.	D	P	A
Query Conservation																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		W	K	L	S	T	S	S	S	E	L	D	S	V	L	G	G	G	L	E	S	Q	S	V	T	E	F	A	G	V	F	G	S	G	K	T	Q	I	M	H	Q	S	C	V	N	L	Q	N	P	E	F	L	F	Y	D	E	E	A	V	S	K	G	E	V	A	Q	P	K	A	V	Y	I	D	T	E	G	T	F	R	P	E
Template Known Secondary structure							S								T	T	T	S			B	T	S							S	T	T	S	S												T	T		G	G	G					T	T	T	S		G	G	G	G	S	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.							.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.											.	.	.	.	.	.	.	130
Predicted Secondary structure														.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	F	Q	L	D	D	S	Q	G	P	E	.	.	.	.	.	.	K	I	K	L	F	S	M	L	N	H	E	K	G	L	Y	Y	L	T	R	D	L	Q	C	S	I	D	P	H	N	Y	L	F	I	L	V	C	A	N	N	A	W	Q	N	I	.	.	.	.	.	.	.	.	.	.	P	A	E	R	L	R	S	W
Query Conservation														.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	M	Q	M	A	E	H	A	G	I	D	G	Q	T	V	L	D	N	T	F	V	A	R	A	Y	N	S	D	M	Q	M	L	F	A	E	K	I	E	D	L	I	Q	E	G	N	N	I	K	L	V	V	I	D	S	L	T	S	T	F	R	N	E	Y	T	G	R	G	K	L	A	E	R	Q	Q	K	L	G	R	H
Template Known Secondary structure											T	S								T							S	S										T							T	T											S	S							S		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	M	N	K	W	S	R	L	N	H	C	S	L	L	V	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	T	L	N	K	L	A	D	L	F	N	C	V	V	L	V	T	N
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions