Job Description P37657 Confidence 7.69% Date Thu Jan 5 11:56:30 GMT 2012 Rank 92 Aligned Residues 126 % Identity 13% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		52	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		E	T	A	H	V	A	V	I	S	M	D	S	.	D	P	A	K	I	F	Q	L	D	D	S	Q	G	P	E	K	I	K	L	F	S	M	L	N	H	E	K	G	L	Y	Y	L	T	R	D	L	Q	C	S	I	D	P	H	N	Y	L	F	I	L	V	C	A	N	N	A	W	Q	N	I	P	A	E	R	L	R	S	W
Query Conservation														.
Alig confidence														.																																																						.
Template Conservation																																																																				.
Template Sequence		R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	.	R	H	G	Y	G	E	E	T	K	L	L	E	E
Template Known Secondary structure		T	S					B						S	S	S		S											T	T							S	S				T	T													T	T		S									.	S			S	S	T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	M	N	K	W	S	R	L	N	H	C	S	L	L	V	I	N	P	G	N	N	N	D	K	Q	F	S	L	L	L	E	E	Y	R	S	L	F	G	L	A	S	L	R	F	Q	G	D
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		M	K	E	M	Y	D	.	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	T	K	M	D	G
Template Known Secondary structure								.					S								T	T	T	G	G	G	G									T	T		S	S								S	S	S
Template Predicted Secondary structure								.
Template SS confidence
		202	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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