Job Description P75818 Confidence 7.79% Date Thu Jan 5 12:14:31 GMT 2012 Rank 32 Aligned Residues 55 % Identity 35% Template c3s6xA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:outer capsid protein sigma-1; PDBTitle: structure of reovirus attachment protein sigma1 in complex with alpha-2 2,3-sialyllactose Resolution 2.25 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130										.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.
Query Sequence		R	E	L	L	T	N	D	P	F	S	S	R	T	T	L	P	D	S	A	H	V	A	S	A	S	T	I	P	N	R	D	A	R	N	I	P	L	R	V	D	L	K	Q	G	D	Q	.	.	.	.	.	.	.	.	.	G	W	Q	D	E	V	L	M	I	Q	E	G	Q	C	W	V	I	D	D	V	R	Y	L	G	G
Query Conservation																																																.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.										.	.	.	.																			.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.										.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	L	L	T	G	D	T	.	.	.	.	.	.	.	E	P	A	F	H	N	D	V	V	.	.	.	.	T	Y	G	A	Q	T	V	A	I	G	L	S	S	G	G	T	P	Q	Y	M	S	K	N	L	W	V	E	Q	W	Q	D	G	V	L	R	L	R	V	.	.	.	.	.	.	.	.	.	.	E	G	G	G
Template Known Secondary structure		T	T			G	G	G	G	.	.	.	.	.	.	.		B	T	T	T	T				.	.	.	.													S	S	S	S															T	T							.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure										.	.	.	.	.	.	.										.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		376	.	.	.	380	.	.	.								.	.	.	.	.	.	390	.	.					.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430											.	.	.	.
		156	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	H	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	T	H	S
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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