Job Description P11458 Confidence 100.00% Date Thu Jan 5 11:32:40 GMT 2012 Rank 2 Aligned Residues 270 % Identity 40% Template d1wzua1 SCOP info NadA-like NadA-like NadA-like Resolution 2.00

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	R	E	K	I	K	R	L	L	K	E	R	N	A	V	M	V	A	H	Y	Y	T	D	P	E	I	Q	Q	L	A	E	E	T	G	G	C	I	S	D	S	L	E	M	A	R	F	G	A	K	H	P	A	S	T	L	L	V	A	G	V	R	F	M	G	E	T	A	K	I	L	S	P	E	K	T	I	L	M	P
Query Conservation
Alig confidence																																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		D	L	V	E	E	I	L	R	L	K	E	E	R	N	A	I	I	L	A	H	N	Y	Q	L	P	E	V	Q	D	I	A	D	F	I	G	.	.	.	.	D	S	L	E	L	A	R	R	A	T	R	V	D	A	D	V	I	V	F	A	G	V	D	F	M	A	E	T	A	K	I	L	N	P	D	K	V	V	L	I	P
Template Known Secondary structure															T							T	T	S									S				.	.	.	.										T	T		S	S	S						S													T	T	S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.					.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	Q	A	E	C	S	L	D	L	G	C	P	V	E	E	F	N	A	F	C	D	A	H	P	D	R	T	V	V	V	Y	A	N	T	S	A	A	V	K	A	R	A	D	W	V	V	T	S	S	I	A	V	E	L	I	D	H	L	D	S	L	G	E	K	I	I	W	A	P	D	K	H	L	G	R	Y	V	Q	K
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Sequence		S	V	E	H	I	L	.	.	.	.	.	.	.	.	.	.	.	.	E	A	K	R	K	Y	P	N	A	P	V	V	L	Y	V	N	S	T	A	E	A	K	A	Y	A	D	V	T	V	T	S	A	N	A	V	E	V	V	K	K	L	D	S	.	.	D	V	V	I	F	G	P	D	K	N	L	A	H	Y	V	A	K
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.						S	T	T	S						S	S	S						T	T		S					T	T	T							T		S		.	.	S						S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template SS confidence
		78	.	80	.	.	.													.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	G	G	D	I	L	C	W	Q	G	A	C	I	V	H	D	E	F	K	T	Q	A	L	T	R	L	Q	E	E	Y	P	D	A	A	I	L	V	H	P	E	S	P	Q	A	I	V	D	M	A	D	A	V	G	S	T	S	Q	L	I	A	A	A	K	T	L	P	H	Q	R	L	I	V	A	T	D	R	G	I	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																																																						.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																																						.	.
Template Sequence		M	T	G	.	.	.	.	.	.	.	.	.	K	K	I	I	P	V	F	T	L	D	D	V	E	R	A	K	K	L	H	P	N	A	K	L	M	I	H	P	E	C	I	P	E	V	Q	E	K	A	D	I	I	A	S	T	G	G	M	I	K	R	A	C	E	.	.	W	D	E	W	V	V	F	T	E	R	E	M	V
Template Known Secondary structure					.	.	.	.	.	.	.	.	.																				T	T							T	T	S							T		S												G	G	G	.	.		S						S		T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																																						.	.
Template SS confidence
		156	.	.										.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	M	Q	Q	A	V	P	D	K	E	L	L	E	A	P	T	A	G	E	G	A	T	C	R	S	C	A	H	C	P	W	M	A	M	N	G	L	Q	A	I	A	E	A	L	E	Q	E	G	S	N	H	E	V	H	V	D	E	R	L	R	E	R	A	L	V	P	L	N	R	M	L	D	F
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.								.	.	.	.														.	.
Template Conservation																	.	.	.	.	.	.	.	.	.								.	.	.	.														.	.
Template Sequence		Y	R	L	R	K	L	Y	P	Q	K	K	F	Y	P	A	.	.	.	.	.	.	.	.	.	R	E	D	A	F	C	A	.	.	.	.	I	T	L	K	N	I	Y	E	S	L	K	D	M	.	.	K	Y	K	V	E	V	P	E	E	I	A	R	K	A	R	K	A	I	E	R	M	L	E	M
Template Known Secondary structure									T	T	S					T	.	.	.	.	.	.	.	.	.	T	T	T					.	.	.	.													T	.	.		S	B
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.								.	.	.	.														.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250										.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions