Job Description P11458 Confidence 14.74% Date Thu Jan 5 11:32:40 GMT 2012 Rank 92 Aligned Residues 159 % Identity 13% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.												.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	I	D	E	K	A	Y	Y	R	E	K	I	K	R	L	L	K	E	R	N	A	V	M	V	A	H	Y	Y	T	D	P	E	I	Q	Q	L	A	E	E	T	G	G	C	I	S	D	S	L	E	M	A	R	F	G	A	K	H	P	A	S	T	L	L	V	A	.	.	.	.	.	.	.	.	.	.	.	G	V	R
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	H	E	E	H	K	K	V	I	E	K	V	V	D	V	V	N	G	R	V	Q	V	I	A	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	N	C	T	E	E	A	I	E	L	S	V	F	A	E	D	V	G	A	D	A	V	L	S	I	T	P	Y	Y	N	K	P	T	Q	E	G	L	R	K
Template Known Secondary structure		S																	T	T	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.			S	S															T		S									S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.														.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	G	E	T	A	K	I	L	S	P	E	K	T	I	L	M	P	T	L	Q	A	E	C	S	L	D	L	G	C	P	V	E	E	F	N	A	F	C	D	A	H	P	D	R	T	V	V	V	Y	A	N	T	S	A	A	V	K	A	R	A	D	W	V	V	T	S	S	I	A	V	E	L	I	D	H	L	D	S	L
Query Conservation
Alig confidence																													.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	F	G	K	V	A	E	S	I	N	L	P	I	V	L	Y	N	V	P	S	R	T	A	V	N	L	E	.	.	.	.	P	K	T	V	K	L	L	A	E	E	Y	S	N	I	S	A	V	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	P	N	L	S	Q	V	S	E	L	I	H	D	A
Template Known Secondary structure											S	S												S					.	.	.	.												T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S												T
Template Predicted Secondary structure																													.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	K	I	I	W	A	P	D	K	H	L	G	R	Y	V	Q	K	Q	T	G	G	D	I	L	C	W	Q	G	A	C	I	V	H	D	E	F	K	T	Q	A	L	T	R	L	Q	E	E	Y
Query Conservation
Alig confidence																							.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		K	I	T	V	L	S	G	N	D	E	L	T	L	P	I	I	A	L	G	G	K	.	.	.	.	.	.	.	G	V	I	S	V	V	A	N	I	V	P	K	E	F	V	E	M	V	N	Y	A
Template Known Secondary structure								S	S	G	G	G								T			.	.	.	.	.	.	.					S	G	G	G	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions