Job Description P26646 Confidence 100.00% Date Thu Jan 5 11:43:02 GMT 2012 Rank 27 Aligned Residues 318 % Identity 16% Template c3pi7A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidoreductase; PDBTitle: crystal structure of a putative nadph:quinone reductase (mll3093) from2 mesorhizobium loti at 1.71 a resolution Resolution 1.71 Å

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		1	.	.	.	.	.	.	.	.	10													.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Q	A	L	L	L	E	Q	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	G	K	T	L	A	S	V	Q	T	L	D	E	S	R	L	P	E	G	D	V	T	V	D	V	H	W	S	S	L	N	Y	K	D	A	L	A	I	T	G	K	G	K	I	I	R	N	F	P	M	I	P	G	I	D	F	A	G	T
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	K	A	L	L	L	V	G	D	G	Y	T	K	T	P	S	G	S	A	L	E	A	X	E	P	Y	L	E	Q	G	R	I	A	V	P	A	P	G	P	S	Q	V	L	I	K	V	N	L	A	S	I	N	P	S	D	V	A	F	I	K	G	Q	Y	G	Q	P	R	V	K	G	R	P	A	G	F	E	G	V	G	T
Template Known Secondary structure									S		B	S		S	S				S					S	T	T	T													T	T																				T	T		S	S	S		B		T	T	S	B			S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	T	S	E	D	P	R	F	H	A	G	Q	E	V	L	L	T	G	W	G	V	G	E	N	H	W	G	G	L	A	E	Q	A	R	V	K	G	D	W	L	V	A	M	P	Q	G	L	D	A	R	K	A	M	I	I	G	T	A	G	F	T	A	M	L	C	V	M	A	L	E	D	A	G	V	R	P	Q	D	G
Query Conservation
Alig confidence																																																																											.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		I	V	A	G	G	D	E	P	Y	A	K	S	L	V	G	K	R	V	A	F	A	T	G	L	S	N	W	G	S	W	A	E	Y	A	V	A	E	A	A	A	C	I	P	L	L	D	T	V	R	D	E	D	G	A	A	X	I	V	N	P	L	T	A	I	A	X	F	D	I	V	K	Q	E	.	.	.	.	G	E	K
Template Known Secondary structure							S	S							T	T								T	T	S	S			S	S	B	S						G	G	G						T	T	S						T	T	S	S																	.	.	.	.			S
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		E	I	V	V	T	G	A	S	G	G	V	G	S	T	A	V	A	L	L	H	K	L	G	Y	Q	V	V	A	V	S	G	R	E	S	T	H	E	Y	L	K	S	L	G	A	S	R	V	L	P	R	D	E	F	A	E	S	R	P	L	E	K	.	.	.	.	Q	V	W	A	G	A	I	D	T	V	G	D	K	V	L
Query Conservation																																																															.	.	.	.
Alig confidence																																																															.	.	.	.
Template Conservation
Template Sequence		A	F	V	X	T	A	G	A	S	Q	L	C	K	L	I	I	G	L	A	K	E	E	G	F	R	P	I	V	T	V	R	R	D	E	Q	I	A	L	L	K	D	I	G	A	A	H	V	L	N	E	K	A	P	D	F	E	A	T	L	R	E	V	X	K	A	E	Q	P	R	I	F	L	D	A	V	T	G	P	L	A
Template Known Secondary structure						S	S	T	T	S														T								S		G	G	G								T		S					T	T	S	T	T																				S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																									.																							.	.	.
Query SS confidence																									.																							.	.	.
Query Sequence		A	K	V	L	A	Q	M	N	Y	G	G	C	V	A	A	C	G	L	A	G	G	F	T	.	L	P	T	T	V	M	P	F	I	L	R	N	V	R	L	Q	G	V	D	S	V	M	.	.	.	T	P	P	E	R	R	A	Q	A	W	Q	R	L	V	A	D	L	P	E	S	F	Y	T	Q	A	A	K	E	I	S	L
Query Conservation																									.																							.	.	.
Alig confidence																									.																							.	.	.
Template Conservation
Template Sequence		S	A	I	F	N	A	X	P	K	R	A	R	W	I	I	Y	G	R	L	D	P	D	A	T	V	I	R	E	P	G	Q	L	I	F	Q	H	K	H	I	E	G	F	W	L	S	E	W	X	R	Q	F	K	E	R	R	G	P	A	I	L	E	A	Q	K	R	F	S	D	G	R	W	S	T	V	T	A	V	V	P	L
Template Known Secondary structure								S		T	T									S			S					S		T						S																T																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	P	N	F	A	E	A	I	I	N	N	Q	I	Q	G	R	T	L	V	K	V
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		A	E	A	I	A	W	V	P	.	A	E	L	T	K	P	N	G	K	V	F	I	R	P
Template Known Secondary structure										.				T	S	S	S	S
Template Predicted Secondary structure										.
Template SS confidence
		327	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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