Phyre 2 alignment of P26646 with c2j3iB

Job Description P26646
Confidence 100.00% Date Thu Jan 5 11:43:02 GMT 2012

Rank 49 Aligned Residues 315

% Identity 17% Template c2j3iB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent oxidoreductase p1; PDBTitle: crystal structure of arabidopsis thaliana double bond2 reductase (at5g16970)-binary complex

Resolution 2.8 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.			10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.					.	.	.	.
Predicted Secondary structure										.	.				.	.														.	.	.																														.	.										.	.	.	.
Query SS confidence										.	.				.	.														.	.	.																														.	.										.	.	.	.
Query Sequence	M	Q	A	L	L	L	E	Q	Q	.	.	D	G	K	.	.	T	L	A	S	V	Q	T	L	D	E	S	R	L	.	.	.	P	E	G	D	V	T	V	D	V	H	W	S	S	L	N	Y	K	D	A	L	A	I	T	G	K	G	K	I	I	.	.	R	N	F	P	M	I	P	G	I	.	.	.	.	D	F	A	G
Query Conservation										.	.				.	.														.	.	.																														.	.										.	.	.	.
Alig confidence										.	.				.	.														.	.	.																														.	.										.	.	.	.
Template Conservation
Template Sequence	N	K	Q	V	I	L	K	D	Y	V	S	G	F	P	T	E	S	D	F	D	F	T	T	T	T	V	E	L	R	V	P	E	G	T	N	S	V	L	V	K	N	L	Y	L	S	C	D	P	Y	M	R	I	R	M	G	K	P	D	P	S	T	A	A	L	A	Q	A	Y	T	P	G	Q	P	I	Q	G	Y	G	V	S
Template Known Secondary structure			B				S	S		B	S	S	S			G	G	G											S				S	S	S													G	G	G	G	T	T	T	B				T	T	T	T			.					T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	1005	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.

	68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	R	T	S	E	D	P	R	F	H	A	G	Q	E	V	L	L	T	G	W	G	V	G	E	N	H	W	G	G	L	A	E	Q	A	R	V	K	G	D	W	L	V	A	M	P	Q	G	L	D	A	R	K	A	M	I	I	G	T	A	G	F	T	A	M	L	C	V	M	A	L	E	D	A	G	V	R	P	Q	D
Query Conservation
Alig confidence																				.	.	.	.	.	.																															.	.
Template Conservation																				.	.	.	.	.	.																															.	.
Template Sequence	R	I	I	E	S	G	H	P	D	Y	K	K	G	D	L	L	W	G	I	.	.	.	.	.	.	V	A	W	E	E	Y	S	V	I	T	P	M	T	H	A	H	F	K	I	Q	H	T	D	V	P	L	S	Y	Y	T	.	.	G	L	L	G	M	P	G	M	T	A	Y	A	G	F	Y	E	V	C	S	P	K	E	G
Template Known Secondary structure							S	T	T			T	T							.	.	.	.	.	.			S	B	S	S							T	T	T								S	S		G	G	G	G	G	.	.	T	T	T	S												T	T	S				T	T
Template Predicted Secondary structure																				.	.	.	.	.	.																															.	.
Template SS confidence
	1085	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.							.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.			.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																										.															.	.	.	.
Query SS confidence																																										.															.	.	.	.
Query Sequence	G	E	I	V	V	T	G	A	S	G	G	V	G	S	T	A	V	A	L	L	H	K	L	G	Y	Q	V	V	A	V	S	G	R	E	S	T	H	E	Y	L	K	.	S	L	G	A	S	R	V	L	P	R	D	E	F	A	.	.	.	.	E	S	R	P	L	E	K	Q	V	W	A	G	A	I	D	T	V	G	D	K
Query Conservation																																										.															.	.	.	.
Alig confidence																																										.															.	.	.	.
Template Conservation
Template Sequence	E	T	V	Y	V	S	A	A	S	G	A	V	G	Q	L	V	G	Q	L	A	K	M	M	G	C	Y	V	V	G	S	A	G	S	K	E	K	V	D	L	L	K	T	K	F	G	F	D	D	A	F	N	Y	K	E	E	S	D	L	T	A	A	L	K	R	C	F	P	N	G	I	D	I	Y	F	E	N	V	G	G	K
Template Known Secondary structure						S	S		S	S	T	T										T	T	T								S	S	T	T							T	T	T			S					T	T	T		S	S										T	T		B	S					S	S		T
Template Predicted Secondary structure
Template SS confidence
	1157	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.

	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.																																																.
Query SS confidence																					.	.	.	.	.																																																.
Query Sequence	V	L	A	K	V	L	A	Q	M	N	Y	G	G	C	V	A	A	C	G	L	.	.	.	.	.	A	G	G	F	T	L	P	T	T	V	M	P	F	I	L	R	N	V	R	L	Q	G	V	D	S	V	M	T	P	P	E	R	R	A	Q	A	W	Q	R	L	V	A	D	L	P	E	S	.	F	Y	T	Q	A	A	K
Query Conservation																					.	.	.	.	.																																																.
Alig confidence																					.	.	.	.	.																												.																				.
Template Conservation																																																					.
Template Sequence	M	L	D	A	V	L	V	N	M	N	M	H	G	R	I	A	V	C	G	M	I	S	Q	Y	N	L	E	N	Q	E	G	V	H	N	L	S	N	I	I	Y	K	R	N	R	I	Q	G	F	V	V	S	D	.	F	Y	D	K	Y	S	K	F	L	E	F	V	L	P	H	I	R	E	G	K	I	T	Y	V	E	D	V
Template Known Secondary structure									B		T	T									T	T	G	G	G		S	S							G	G	G	G	G	T	S									G	G	G	.	G	T	T	T	T												T	T	T	S
Template Predicted Secondary structure																																																					.
Template SS confidence
	1237	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.		.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	I	S	L	S	E	A	P	N	F	A	E	A	I	I	N	N	Q	I	Q	G	R	T	L	V	K	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	D	G	L	E	K	A	P	E	A	L	V	G	L	F	H	G	K	N	V	G	K	Q	V	V	V	V	A
Template Known Secondary structure		B	S	G	G	G								T	T	T	T			S	S						S	S
Template Predicted Secondary structure
Template SS confidence
	1316	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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