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Job DescriptionP26646
Confidence100.00%DateThu Jan 5 11:43:02 GMT 2012
Rank1Aligned Residues320
% Identity99%Templatec1o89A_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:yhdh; PDBTitle: crystal structure of e. coli k-12 yhdh
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAG
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Template Sequence  LQALLLE. . . QQTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAG
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GGGS
S
S

T
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SSSB


S
STT

TT
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   1...... ..10.........20.........30.........40.........50.........60.........70.......
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  QEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
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Template Sequence  QEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
Template Known Secondary structure 

TTBTTTB

SSBS
GGG


TT

TT

GGG
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAAC
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Template Sequence  STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAAC
Template Known Secondary structure  TT

S
GGGTGGGSSS

SS



SS
T
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  GLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTL
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Template Sequence  GLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTL
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TT
S




S



SSS

S
SS


GGGTT


S
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   321..
Predicted Secondary structure 
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Query Sequence  VKV
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Template Conservation 
 
Template Sequence  VKV
Template Known Secondary structure 
Template Predicted Secondary structure 
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   321..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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