Job Description P26646 Confidence 100.00% Date Thu Jan 5 11:43:02 GMT 2012 Rank 10 Aligned Residues 316 % Identity 15% Template c1ma0B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione-dependent formaldehyde dehydrogenase; PDBTitle: ternary complex of human glutathione-dependent formaldehyde2 dehydrogenase with nad+ and dodecanoic acid Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		M	Q	A	L	L	L	E	Q	Q	D	G	K	T	L	A	S	V	Q	T	L	D	E	S	R	L	P	E	G	D	V	T	V	D	V	H	W	S	S	L	N	Y	K	D	A	L	A	I	T	G	K	G	K	I	I	R	N	F	P	M	I	P	G	I	D	F	A	G	T	V	R	T	S	E	.	.	D	P	R	F	H
Query Conservation																																																																											.	.
Alig confidence														.	.																																									.																			.	.
Template Conservation														.	.																																									.
Template Sequence		C	K	A	A	V	A	W	E	A	G	K	P	.	.	L	S	I	E	E	I	E	V	A	P	P	K	A	H	E	V	R	I	K	I	I	A	T	A	V	C	H	T	D	A	Y	T	L	S	G	A	D	P	E	G	.	C	F	P	V	I	L	G	H	E	G	A	G	I	V	E	S	V	G	E	G	V	T	K	L	K
Template Known Secondary structure							B		S	T	T	S		.	.													T	T																					T			T	T		.		S	S	B															T	T			S
Template Predicted Secondary structure														.	.																																									.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.																																											.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	Q	E	V	L	L	T	G	W	G	V	G	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	W	G	G	L	A	E	Q	A	R	V	K	G	D	W	L	V	A	M	P	Q	G	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	D	T	V	I	P	L	Y	I	P	Q	C	G	E	C	K	F	C	L	N	P	K	T	N	L	C	Q	K	I	R	V	T	Q	G	K	G	L	M	P	D	G	T	S	R	F	T	C	K	G	K	T	I	L	H	Y	M	G	T	S	T	F	S	E	Y	T	V	V	A	D	I	S	V	A	K	I	D	P	L	A
Template Known Secondary structure		T	T							S	S				S	S	S	T	T	T	T		T	T						T	T						T	T			T	T	S			S				T	T				B			T	T	T			S	B	S						G	G	G						T	T	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	R	K	A	M	I	I	G	T	A	G	F	T	A	M	L	C	V	M	A	L	E	D	A	G	V	R	P	Q	D	G	E	I	V	V	T	G	A	S	G	G	V	G	S	T	A	V	A	L	L	H	K	L	G	Y	Q	V	V	A	V	S	G	R	E	S	T	H	E	Y	L	K	S	L	G	A	S	R	V	L
Query Conservation
Alig confidence																					.	.	.
Template Conservation																					.	.	.
Template Sequence		P	L	D	K	V	C	L	L	G	C	G	I	S	T	G	Y	G	A	A	.	.	.	V	N	T	A	K	L	E	P	G	S	V	C	A	V	F	G	L	G	G	V	G	L	A	V	I	M	G	C	K	V	A	G	A	S	R	I	I	G	V	D	I	N	K	D	K	F	A	R	A	K	E	F	G	A	T	E	C	I
Template Known Secondary structure							G	G	G	G	T										.	.	.		T	T	T				T	T									S													T	T		S							S		G	G	G								T		S
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		197	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																																																				.
Query SS confidence								.	.	.	.	.	.																																																				.
Query Sequence		P	R	D	E	F	A	.	.	.	.	.	.	E	S	R	P	L	E	K	Q	V	W	A	G	A	I	D	T	V	G	D	K	V	L	A	K	V	L	A	Q	M	N	Y	G	G	C	V	A	A	C	G	L	A	G	G	F	T	L	P	T	T	V	M	.	P	F	I	L	R	N	V	R	L	Q	G	V	D	S	V	M
Query Conservation								.	.	.	.	.	.																																																				.
Alig confidence								.	.	.	.	.	.																																																				.
Template Conservation
Template Sequence		N	P	Q	D	F	S	K	P	I	Q	E	V	L	I	E	M	T	D	G	G	V	D	Y	S	F	E	C	I	G	N	V	K	V	M	R	A	A	L	E	A	C	H	K	G	W	G	V	S	V	V	V	G	V	A	A	S	G	E	E	I	A	T	R	P	F	Q	L	V	T	G	R	T	W	K	G	T	A	F	G	G
Template Known Secondary structure			G	G	G		S	S											T	S		B	S						S												T	B		T	T	T							S				T	T							T					T	T							S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	P	E	R	R	A	Q	A	W	Q	R	L	V	A	D	L	P	E	S	F	Y	T	Q	A	A	K	E	I	S	L	S	E	A	P	N	F	A	E	A	I	I	N	N	Q	I	Q	G	R	T	L	V	K	V
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		W	K	S	V	E	S	V	P	K	L	V	S	E	Y	M	S	K	K	I	K	V	D	E	F	V	T	H	N	L	S	F	D	E	I	N	K	A	F	E	L	M	H	S	G	K	S	.	I	R	T	V	V	K	I
Template Known Secondary structure																	T	T	S	S			G	G	G							G	G	G										T	T			.	S
Template Predicted Secondary structure																																																.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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