Return to main results Retrieve Phyre Job Id

Job DescriptionP45420
Confidence99.91%DateThu Jan 5 12:02:33 GMT 2012
Rank4Aligned Residues110
% Identity17%Templated3bwud1
SCOP infoFimD N-terminal domain-like FimD N-terminal domain-like Usher N-domain
Resolution1.76

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80... ......90.........100.
Predicted Secondary structure 























.....








..
Query SS confidence 






















































. . . . .

















. .
Query Sequence  VDFDRETLKSLGVDPNISHYFSRSARFLPGEYSLIVSVNGEKKGNIATRFDENGD. . . . . ICLDQAFLQQAGLKIPSE. .
Query Conservation    
    
            
       

 
 
 
 

                ..... 

    
   

     ..
Alig confidence 






















































.....

















..
Template Conservation   


   
        


 
       

 
 


 

        
 
          



   
   

       
Template Sequence  LYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVAG
Template Known Secondary structure 



GGGGTT
TTTT
SS
STT
SSTTS


TTB
GGGSTT
Template Predicted Secondary structure 


































Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   102.......110.........120.........130........
Predicted Secondary structure  ....

















Query SS confidence  . . . .




































Query Sequence  . . . . EKNGCYDYILSYPGTTITPLPNQEALDIIVSPQAIIP
Query Conservation  ....    
              
     
 
 

   
  
Alig confidence  ....




































Template Conservation          
  
   

 
    
     
 




  
  
Template Sequence  MNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSN
Template Known Secondary structure  GGGS
TT



STT
TTTT

GGGB

Template Predicted Secondary structure 



















Template SS confidence 








































   82.......90.........100.........110.........120..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions