Job Description P45420 Confidence 100.00% Date Thu Jan 5 12:02:33 GMT 2012 Rank 2 Aligned Residues 450 % Identity 22% Template c3ohnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain Resolution 3.01 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	A	L	L	N	Y	S	L	M	S	S	R	A	E	F	S	N	.	G	S	S	D	Y	S	Q	A	A	L	E	G	G	I	N	I	N	D	W	M	L	R	S	H	Q	F	L	T	Q	T	N	G	T	F	S	N	Q	N	S	S	T	Y	L	Q	R	T	F	T	D	L	K	T	L	M	R	A	G	E	V	N	L	N
Query Conservation																			.
Alig confidence																			.																																		.
Template Conservation																																																					.
Template Sequence		A	G	L	L	N	Y	N	F	S	G	N	S	V	Q	N	R	I	G	G	N	S	H	Y	A	Y	L	N	L	Q	S	G	L	N	I	G	A	W	R	L	R	D	N	T	T	W	S	Y	N	S	S	N	.	K	W	Q	H	I	N	T	W	L	E	R	D	I	I	P	L	R	S	R	L	T	L	G	D	G	Y	T	Q
Template Known Secondary structure																	S	T	T																S	S	S																.														T	T	T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	V	L	E	G	A	S	I	Y	G	I	E	I	A	P	D	N	A	L	Q	T	S	G	S	G	V	Q	V	T	G	I	A	N	T	S	Q	A	R	V	E	I	R	Q	Q	G	V	L	I	H	S	I	L	V	P	A	G	A	F	T	I	P	D	V	P	V	R	N	G	N	S	D	L	N	V	T	V	V	E	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.										.
Template Conservation																					.	.	.	.	.	.	.										.
Template Sequence		G	D	I	F	D	G	I	N	F	R	G	A	Q	L	A	S	D	D	N	.	.	.	.	.	.	.	P	V	I	H	G	I	A	R	G	.	T	A	Q	V	T	I	K	Q	N	G	Y	D	I	Y	N	S	T	V	P	P	G	P	F	T	I	N	D	I	Y	A	A	G	N	S	G	D	L	Q	V	T	I	K	E	A
Template Known Secondary structure		T	T	S	S																.	.	.	.	.	.	.								S	S	.	S								T	T										S											T	T	T	T	S									S
Template Predicted Secondary structure																					.	.	.	.	.	.	.										.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.								.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure												.																								.	.																																											.	.
Query SS confidence												.																								.	.																																											.	.
Query Sequence		D	G	S	S	H	N	Y	I	V	P	.	S	T	L	F	N	Q	H	V	E	S	F	Q	G	Y	R	F	A	I	G	R	V	D	D	.	.	D	Y	D	E	S	P	W	V	I	S	A	S	S	G	W	N	L	T	R	W	S	A	M	N	G	G	V	I	V	A	E	N	Y	Q	A	A	S	I	R	S	S	L	.	.
Query Conservation												.																								.	.																																											.	.
Alig confidence												.																								.	.																																											.	.
Template Conservation
Template Sequence		D	G	S	T	Q	I	F	T	V	P	Y	S	S	V	P	L	L	Q	R	E	G	H	T	R	Y	S	I	T	A	G	E	Y	R	S	G	N	A	Q	Q	E	K	P	R	F	F	Q	S	T	L	L	H	G	L	P	A	G	W	T	I	Y	G	G	T	Q	L	A	D	R	Y	R	A	F	N	F	G	I	G	K	N	M
Template Known Secondary structure		S	S																		T	T															S	T	T																G	G	G											S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.									.	.	450	.	.	.	.	.	.
Predicted Secondary structure																									.																																								.	.	.	.	.	.	.	.
Query SS confidence																									.																																								.	.	.	.	.	.	.	.
Query Sequence		V	P	L	P	D	L	T	V	S	S	Q	I	S	T	S	Q	D	T	K	D	S	L	Q	.	G	Q	K	Y	R	L	D	A	N	Y	N	L	P	F	S	L	G	L	T	T	S	L	T	R	S	D	R	H	Y	R	E	L	S	E	A	I	D	D	D	.	.	.	.	.	.	.	.	Y	T	D	P	T	K	S	T	Y
Query Conservation																									.																																								.	.	.	.	.	.	.	.
Alig confidence																									.																			.																					.	.	.	.	.	.	.	.
Template Conservation																																												.
Template Sequence		G	A	L	G	A	L	S	V	D	M	T	Q	A	N	S	T	L	P	D	D	S	Q	H	D	G	Q	S	V	R	F	L	Y	N	K	S	L	G	T	N	I	Q	L	.	V	G	Y	R	Y	S	T	S	G	Y	F	N	F	A	D	T	T	Y	S	R	M	N	G	T	D	Y	Y	N	L	A	Y	N	K	R	G	K	L
Template Known Secondary structure			T	T															T	T																								.								T	T								S	S		S									T	T	S
Template Predicted Secondary structure																																												.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	G	L	N	W	S	N	S	I	L	G	G	F	N	I	S	G	Y	K	T	Y	S	Y	D	G	D	N	D	S	S	N	L	N	I	N	W	N	K	A	F	K	H	A	T	V	S	V	N	W	Q	H	Q	L	S	A	S	E	N	N	E	D	D	G	D	L	F	Y	V	N	I	S	I	P	F	G	R	S	N	T
Query Conservation
Alig confidence																																																									.	.
Template Conservation																																																									.	.
Template Sequence		Q	L	T	V	T	Q	Q	L	G	R	T	S	T	L	Y	L	S	G	S	H	Q	T	Y	W	G	T	S	N	V	D	E	Q	F	Q	A	G	L	N	T	A	F	E	D	I	N	W	T	L	S	Y	S	L	T	K	N	.	.	A	W	Q	K	G	R	D	Q	M	L	A	L	N	V	N	I	P	F	A	S	A	S	Y
Template Known Secondary structure										T	T	T													S	S	S																S	S													.	.	T	T	T
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.			540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.				.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		A	T	L	Y	T	R	H	D	D	H	K	T	H	Y	G	T	G	V	M	G	V	V	S	D	E	M	S	Y	Y	V	N	A	E	R	D	.	.	.	H	D	E	R	E	T	S	L	N	G	S	I	S	S	N	L	H	Y	T	Q	V	S	L	A	A	G	A	S	G	S	D	S	R	T	Y	N	G	T	M	S	G	G
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.																													.
Template Conservation																																																																				.
Template Sequence		S	M	S	H	D	L	N	G	R	M	T	N	L	A	G	V	Y	G	T	L	L	E	D	N	N	L	S	Y	S	V	Q	T	G	Y	A	G	G	G	D	G	N	S	G	S	T	G	Y	A	T	L	N	Y	R	G	G	Y	G	N	A	N	I	G	Y	S	H	S	.	D	D	I	K	Q	L	Y	Y	G	V	S	G	G
Template Known Secondary structure									T	T													T	T	T	T												T	T	S	S														S	S	S											.	S	S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.		.	.	.	.	.	.	.	650	.	.	.	.	.
		614
Predicted Secondary structure
Query SS confidence
Query Sequence		I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		656