Job Description P45420 Confidence 100.00% Date Thu Jan 5 12:02:33 GMT 2012 Rank 3 Aligned Residues 458 % Identity 22% Template c2vqiA_ PDB info PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore Resolution 3.2 Å

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		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																		.																																	.	.	.	.	.	.	.	.
Query SS confidence																		.																																	.	.	.	.	.	.	.	.
Query Sequence		A	L	L	N	Y	S	L	M	S	S	R	A	E	F	S	N	.	G	S	S	D	Y	S	Q	A	A	L	E	G	G	I	N	I	N	D	W	M	L	R	S	H	Q	F	L	T	Q	T	N	G	.	.	.	.	.	.	.	.	T	F	S	N	Q	N	S	S	T	Y	L	Q	R	T	F	T	D	L	K	T	L	M	R
Query Conservation																		.																																	.	.	.	.	.	.	.	.
Alig confidence																		.																	.																.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		L	X	L	D	Y	N	L	N	G	T	V	S	R	N	Y	Q	G	G	D	S	H	Q	F	S	Y	N	G	T	V	G	G	N	L	.	P	W	R	L	R	A	D	Y	Q	G	S	Q	E	Q	S	R	Y	N	G	E	K	T	T	N	R	N	F	T	W	S	R	F	Y	L	F	R	A	I	P	R	W	R	A	N	L	T
Template Known Secondary structure																S	S	S															B		.																		S	S																				T	T	T	S
Template Predicted Secondary structure																																			.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	V	N	L	N	N	S	V	L	E	G	A	S	I	Y	G	I	E	I	A	P	D	N	A	L	Q	T	S	G	S	G	V	Q	V	T	G	I	A	N	T	S	Q	A	R	V	E	I	R	Q	Q	G	V	L	I	H	S	I	L	V	P	A	G	A	F	T	I	P	D	V	P	V	R	N	G	N	S	D	L
Query Conservation
Alig confidence																																												.																														.
Template Conservation																																												.																														.
Template Sequence		L	G	E	N	N	I	N	S	D	I	F	R	S	W	S	Y	T	G	A	S	L	E	S	X	L	P	P	R	L	R	G	Y	A	P	Q	I	T	G	I	A	E	T	.	N	A	R	V	V	V	S	Q	Q	G	R	V	L	Y	D	S	X	V	P	A	G	P	F	S	I	Q	D	L	D	.	S	S	V	R	G	R	L
Template Known Secondary structure										S	S	S																G	G	G	S											S	S	.	S								T	T										S										.	T	T			S
Template Predicted Secondary structure																																												.																														.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		N	V	T	V	V	E	T	D	G	S	S	H	N	Y	I	V	P	.	S	T	L	F	N	Q	H	V	E	S	F	Q	G	Y	R	F	A	I	G	R	V	D	D	D	Y	D	E	S	P	W	V	I	S	A	S	S	G	W	N	L	T	R	W	S	A	M	N	G	G	V	I	V	A	E	N	Y	Q	A	A	S	I	R
Query Conservation																			.
Alig confidence																			.																											.	.
Template Conservation																																														.	.
Template Sequence		D	V	E	V	I	E	Q	N	G	R	K	K	T	F	Q	V	D	T	A	S	V	P	Y	L	T	R	P	G	Q	V	R	Y	K	L	V	S	G	R	S	R	G	Y	E	G	.	.	P	V	F	A	T	G	E	A	S	W	G	L	S	N	Q	W	S	L	Y	G	G	A	V	L	A	G	D	Y	N	A	L	A	A	G
Template Known Secondary structure								T	T	S																		T	T																	.	.													S	S	S											S	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		383	.	.			.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.					.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure					.	.																								.																																					.	.	.	.
Query SS confidence					.	.																								.																																					.	.	.	.
Query Sequence		S	S	L	.	.	V	P	L	P	D	L	T	V	S	S	Q	I	S	T	S	Q	D	T	K	D	S	L	Q	.	G	Q	K	Y	R	L	D	A	N	Y	N	L	P	F	S	L	G	L	T	T	S	L	T	R	S	D	R	H	Y	R	E	L	S	E	A	I	.	.	.	.	D	D	D	Y	T	D	P	T	K	S	T
Query Conservation					.	.																								.																																					.	.	.	.
Alig confidence					.	.																								.														.					.																		.	.	.	.
Template Conservation																																												.					.
Template Sequence		A	G	W	D	L	G	V	P	G	T	L	S	A	D	I	T	Q	S	V	A	R	I	E	G	E	R	T	F	Q	G	K	S	W	R	L	S	Y	S	K	R	F	D	.	D	I	T	F	.	A	G	Y	R	F	S	E	R	N	Y	X	T	X	E	Q	Y	L	N	A	R	Y	R	N	D	Y	S	S	R	E	K	E	X
Template Known Secondary structure							S	S	S															T	T	T																		.					.								T	T													S
Template Predicted Secondary structure																																												.					.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		Y	A	L	G	L	N	W	S	N	S	I	L	G	.	G	F	N	I	S	G	Y	K	T	Y	S	Y	D	G	D	N	D	S	S	N	L	N	I	N	W	N	K	A	F	K	H	A	T	V	S	V	N	W	Q	H	Q	L	S	A	S	E	N	N	E	D	D	G	D	L	F	Y	V	N	I	S	I	P	F	G	R	S
Query Conservation															.
Alig confidence															.																.
Template Conservation																															.
Template Sequence		Y	T	V	T	L	N	K	N	V	A	D	W	N	T	S	F	N	L	Q	Y	S	R	Q	T	Y	W	D	I	R	.	K	T	D	Y	Y	T	V	S	V	N	R	Y	F	N	V	F	L	Q	G	V	A	V	G	L	S	A	S	R	S	K	Y	L	G	R	D	N	D	S	A	Y	L	R	I	S	V	P	L	G	T	G
Template Known Secondary structure											T	T	T	T													S	S	S		.															S	S	S															T	T															T	T
Template Predicted Secondary structure																															.
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.		.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		N	T	A	T	L	Y	T	R	H	D	D	H	K	T	H	Y	G	T	G	V	M	G	V	V	S	D	E	M	S	Y	Y	V	N	A	E	R	D	H	D	.	E	R	E	T	S	L	N	G	S	I	S	S	N	L	H	Y	T	Q	V	S	L	A	A	G	A	S	G	S	D	S	R	T	Y	N	G	T	M	S	G	G
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		T	A	S	Y	S	G	S	X	S	N	D	R	Y	V	N	X	A	G	Y	T	D	T	F	N	D	G	L	D	S	Y	S	L	N	A	G	L	N	S	G	L	T	S	Q	R	Q	I	N	A	Y	Y	S	H	R	S	P	L	A	N	L	S	A	N	I	A	S	L	Q	K	G	Y	T	S	F	G	V	S	A	S	G	G
Template Known Secondary structure											T	T													G	G	G	T																												T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		614	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	I	T	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		633	.	.	.	.