Job Description P0A921 Confidence 19.04% Date Thu Jan 5 11:09:12 GMT 2012 Rank 7 Aligned Residues 138 % Identity 16% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.
Predicted Secondary structure																																																						.																.	.	.	.
Query SS confidence																																																						.																.	.	.	.
Query Sequence		Q	L	F	L	G	F	A	T	D	Y	R	F	A	G	W	T	L	R	D	V	E	M	G	Y	N	H	D	S	N	G	R	S	D	P	T	S	R	S	W	N	R	L	Y	T	R	L	M	A	E	N	G	N	.	W	L	V	E	V	K	P	W	Y	V	V	G	N	T	D	.	.	.	.	D	N	P	D	I	T	K	Y
Query Conservation																																																						.																.	.	.	.
Alig confidence														.	.	.	.	.	.												.	.	.	.	.																			.																.	.	.	.
Template Conservation														.	.	.	.	.	.												.	.	.	.	.
Template Sequence		E	V	N	Y	A	I	K	L	D	D	Q	W	.	.	.	.	.	.	T	V	R	P	G	M	L	T	H	F	S	.	.	.	.	.	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N
Template Known Secondary structure									S	S	S	S		.	.	.	.	.	.												.	.	.	.	.	T	T															S	S	S													S	S					T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.											.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.				.	.	.
Predicted Secondary structure															.											.	.	.	.	.	.	.	.	.	.																																									.	.	.
Query SS confidence															.											.	.	.	.	.	.	.	.	.	.																																									.	.	.
Query Sequence		M	G	Y	Y	Q	L	K	I	G	Y	H	L	G	.	D	A	V	L	S	A	K	G	Q	Y	.	.	.	.	.	.	.	.	.	.	N	W	N	T	G	Y	G	G	A	E	L	G	L	S	Y	P	I	T	K	H	V	R	L	Y	T	Q	V	Y	S	G	Y	G	E	S	L	I	D	Y	N	F	.	.	.	N	Q	T
Query Conservation															.											.	.	.	.	.	.	.	.	.	.																																									.	.	.
Alig confidence															.											.	.	.	.	.	.	.	.	.	.																														.											.	.	.
Template Conservation																																																																	.
Template Sequence		V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	.	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N
Template Known Secondary structure														S	S	S													S	S	S				T	T	S	S	S													S	B	T	T										.			S					T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		278	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	G	V	G	V	M	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	R	I	G	V	S	F	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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