Job Description P0A921 Confidence 50.79% Date Thu Jan 5 11:09:12 GMT 2012 Rank 4 Aligned Residues 77 % Identity 26% Template c2vveB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:spike protein p1; PDBTitle: crystal structure of the stem and receptor binding domain2 of the spike protein p1 from bacteriophage pm2 Resolution 1.77 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																					.																			.
Query SS confidence																																																					.																			.
Query Sequence		F	L	G	F	A	T	D	Y	R	F	A	G	W	T	L	R	D	V	E	M	G	Y	N	H	D	S	N	G	R	S	D	P	T	S	R	S	W	N	R	L	Y	T	R	L	M	A	E	N	G	N	W	.	L	V	E	V	K	P	W	Y	V	V	G	N	T	D	D	N	P	D	.	I	T	K	Y	M	G	Y	Y	Q
Query Conservation																																																					.																			.
Alig confidence																	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.																			.
Template Conservation																	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	F	D	I	D	V	P	P	E	L	D	G	V	P	F	.	S	L	K	A	R	V	R	H	K	S	K	G	V	D	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	Y	T	S	I	S	V	K	P	A	F	Y	I	T	E	G	D	E	T	T	D	T	L	I	K	Y	T	S	Y	G	S
Template Known Secondary structure									G	G	G	T	T				.											T	T	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S													S	S		T	T
Template Predicted Secondary structure																	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.																	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		217	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		L	K	I	.	.	G	Y	H	L	G	D	A	V	L	S	A	K	G
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		T	G	S	H	S	G	Y	D	F	D	D	N	T	L	D	V	M	V
Template Known Secondary structure							S				S	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions