Job Description P0A6T1 Confidence 98.64% Date Thu Jan 5 11:03:51 GMT 2012 Rank 27 Aligned Residues 259 % Identity 13% Template c3knzA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution Resolution 2.50 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	V	M	P	E	V	N	A	V	L	E	K	M	K	T	F	S	E	A	I	I	S	G	E	W	K	G	Y	T	G	K	A	I	T	D	V	V	N	I	G	I	G	G	S	D	L	G	P	Y	M	V	T	E	A	L	R	P	Y	K	N	H	L	N	M	H	F	V	S	N	V	D	G	T	H	I	A	E	V	L
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.																																																	.
Template Conservation																									.	.	.	.	.	.	.	.																																																	.
Template Sequence		L	R	L	L	E	X	L	T	Q	T	R	E	D	L	W	R	A	A	Q	A	L	T	E	.	.	.	.	.	.	.	.	R	G	V	T	R	I	I	L	T	G	S	G	T	S	Y	H	G	A	L	T	A	R	T	F	X	Q	R	W	C	A	L	P	V	D	V	C	W	P	F	X	L	D	D	E	T	L	A	R	.
Template Known Secondary structure										S															.	.	.	.	.	.	.	.	T	T																												T	S							G	G	G									.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.									.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	V	N	P	E	T	T	L	F	L	V	A	S	K	T	F	T	T	Q	E	T	M	T	N	A	H	S	A	R	D	W	F	L	K	A	A	G	D	E	K	H	V	A	K	H	F	A	A	L	S	T	N	A	K	A	V	G	E	F	G	I	D	T	A	N	M	F	E	F	W	D	W	V	G	G	R	Y	S	L
Query Conservation
Alig confidence		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		.	.	.	.	S	G	K	A	L	V	V	G	I	S	Q	G	G	G	S	L	S	T	L	A	A	X	E	R	A	R	N	.	.	.	.	.	.	.	.	.	.	.	V	G	H	I	T	A	S	X	A	G	V	A	P	A	T	I	D	R	A	A	D	.	.	.	.	Y	I	L	T	V	P	C	G	E	T	K	G	Y
Template Known Secondary structure		.	.	.	.	S		S								S	S	S															.	.	.	.	.	.	.	.	.	.	.	T	T								S	S	S	S		G	G	G	G	G		S	.	.	.	.											T
Template Predicted Secondary structure		.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
						77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.												.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		W	S	A	I	G	L	S	I	V	L	S	I	G	F	D	N	F	V	E	L	L	S	G	A	H	A	M	D	K	H	F	S	T	T	P	A	E	K	N	L	P	V	L	L	A	L	I	G	I	W	Y	N	N	F	.	.	.	.	F	G	A	E	T	E	A	I	L	P	Y	D	Q	Y	M	H	R	F	A	A	Y	F
Query Conservation																																																								.	.	.	.
Alig confidence																																																								.	.	.	.														.
Template Conservation																																																																									.
Template Sequence		H	C	T	V	L	N	L	X	L	L	A	L	A	V	A	G	Q	Q	Q	R	L	D	G	E	Q	R	R	S	L	L	L	R	X	E	K	T	F	N	H	L	P	A	L	V	T	A	S	Q	A	W	A	Q	T	N	A	L	A	L	R	D	S	A	D	I	R	L	T	G	P	A	T	.	L	F	G	T	V	Q	E	G
Template Known Secondary structure																			T	T		S																																	T						T		S								G	G	.	G
Template Predicted Secondary structure																																																																									.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.										.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	G	N	M	E	S	N	G	K	Y	V	D	R	N	G	N	.	.	.	.	.	.	.	.	.	V	V	D	Y	Q	T	G	P	I	I	W	G	E	P	G	T	N	G	Q	H	A	F	Y	Q	L	I	H	Q	G	T	K	M	V	P	C
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	K	X	L	E	T	L	R	C	P	V	S	G	Y	E	F	E	E	F	I	H	G	I	Y	N	A	F	N	A	Q	S	A	L	I	X	L	D	P	Q	P	D	A	R	Q	D	R	L	A	Q	I	L	G	E	W	T	P	S	I	Y	R
Template Known Secondary structure											S													T							T	T								S	S																	S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions