Job Description Q47319 Confidence 8.95% Date Thu Jan 5 12:36:46 GMT 2012 Rank 32 Aligned Residues 98 % Identity 11% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.						.	.	.
Query SS confidence																																							.	.						.	.	.
Query Sequence		S	T	I	T	P	A	Q	A	K	S	R	F	C	L	L	M	F	D	T	E	P	M	K	P	S	N	T	G	R	L	I	A	D	I	L	P	D	.	.	T	V	A	F	Q	.	.	.	W	S	R	T	E	P	S	Q	D	L	L	E	L	V	Q	N	P	D	Y	Q	P	M	V	V	F	P	A	S	Y	A	D	E	Q
Query Conservation																																							.	.						.	.	.
Alig confidence																																							.	.						.	.	.
Template Conservation
Template Sequence		E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I
Template Known Secondary structure		S								S	S									T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	V	I	F	T	P	P	A	G	K	P	P	L	F	I	M	L	D	G	T	W	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R
Template Known Secondary structure													T		S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions