Job Description Q47319 Confidence 4.33% Date Thu Jan 5 12:36:46 GMT 2012 Rank 89 Aligned Residues 33 % Identity 3% Template c2aivA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p Resolution UNK

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	Q	P	M	V	V	F	P	A	S	Y	A	D	E	Q	R	E	V	I	F	T	P	P	A	G	K	P	P	L	F	I	M	L	D	G	T	W
Query Conservation
Alig confidence																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		E	P	K	T	C	I	I	Y	A	N	L	P	N	R	P	K	.	.	.	.	.	R	G	E	G	I	N	V	R	A	R	I	T	C	F	N	C	Y
Template Known Secondary structure			S	S	S				S	S	S						S	.	.	.	.	.	S	S												S
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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