Job Description P39359 Confidence 94.61% Date Thu Jan 5 11:59:49 GMT 2012 Rank 142 Aligned Residues 226 % Identity 16% Template d1gk8a1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 1.4

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		P	P	V	S	S	T	F	H	R	D	G	T	L	D	K	K	A	M	R	E	V	A	D	F	L	I	N	K	G	V	D	G	L	F	Y	L	G	T	G	G	E	F	S	Q	M	N	T	A	Q	R	M	A	L	A	E	E	A	V	T	I	V	.	.	.	D	G	R	V	P	V	L	I	G	V	G	S	P	S	T	D
Query Conservation																																																															.	.	.
Alig confidence																																			.																												.	.	.
Template Conservation																																			.
Template Sequence		G	L	L	G	C	T	I	K	P	K	L	G	L	S	A	K	N	Y	G	R	A	V	Y	E	C	L	R	G	G	L	D	F	T	.	D	D	E	N	V	N	S	Q	P	F	M	R	W	R	D	R	F	L	F	V	A	E	A	I	Y	K	A	Q	A	E	T	G	E	V	K	G	H	Y	L	N	A	T	A	G	T	C
Template Known Secondary structure									S	S	S	S																	T	T		S	B		.			T	T		S	S	B	T	T	B																					S	S			B								S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																					.	.	.	110	.	.	.	.	.	.	.	.	.											120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	V	K	L	A	Q	H	A	Q	A	Y	G	A	D	G	I	V	A	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	Y	W	K	V	A	P	R	N	L	D	D	.	.	.	.	.	.	.	.	.	.	Y	Y	Q	Q	I	A	R	S	V	T	L	P	V	I	L	Y
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	M	M	K	R	A	V	A	K	E	L	G	V	P	I	I	M	H	D	Y	L	T	G	G	F	T	A	N	T	S	L	A	I	Y	C	R	D	N	G	L	L	L	H	I	H	R	A	M	H	A	V	I	D	R	Q	R	N	H	G	I	H	F	R	V	L	A	K	A	L	R	M	S	G	G	D	H	L	H	S
Template Known Secondary structure											T	T	T	T		S																									T								T	T						S		S	S	S	S																S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.																						.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	F	P	D	L	T	G	Q	D	L	T	P	E	T	V	T	R	L	A	L	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	I	V	G	I	K	D	T	I	D	S	V	G	H	L	R	T	M	I	N	T	V	K	S	V	R	P	S	F	S	V	F	C	G	Y	D
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation							.																																																													.	.	.
Template Sequence		G	T	V	V	G	.	K	L	E	G	E	R	E	V	T	L	G	F	V	D	L	M	R	D	D	Y	V	E	K	D	R	S	R	G	I	Y	F	T	Q	D	W	S	M	P	G	V	M	P	V	A	S	G	G	I	H	V	W	H	M	P	A	L	V	E	I	F	.	.	.	G	D	D	A	C	L	Q	F	G	G	G
Template Known Secondary structure				S	S	S	.	S	S																	S					B	G	G	G	T	B		S															S	S			G	G	G									.	.	.		S	S	S					S
Template Predicted Secondary structure							.																																																													.	.	.
Template SS confidence
		329	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.				.	.	.	.	.	.	400	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.													230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.			.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.			.
Query Sequence		D	H	L	L	N	T	M	L	L	G	G	D	G	A	I	T	A	S	A	N	F	A	P	E	L	S	V	G	I	Y	R	A	W	R	E	.	.	.	.	.	.	.	.	.	.	.	.	G	D	.	L	A	T	A	A	T	L	N	K	K	L	L	Q	L	P	A	I	Y	A
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.			.
Alig confidence		.	.	.	.	.	.	.													.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.			.
Template Conservation		.	.	.	.	.	.	.													.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	L	G	H	P	W	G	N	A	P	G	A	.	.	.	.	A	A	N	R	V	A	L	E	A	C	T	Q	A	R	N	E	G	R	D	L	A	R	E	G	G	D	V	I	R	S	A	C	K	W	S	P	E	L	A	A	A	C	E	V	W	K
Template Known Secondary structure		.	.	.	.	.	.	.			T	S	T	T							.	.	.	.																T	T																													T
Template Predicted Secondary structure		.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
									406	.	.	.	410	.	.	.	.	.	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions